CX299923

Overview
NameCX299923
Unique NameCX299923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length312
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1043..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   68 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            +KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  222 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            +KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  209 VKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  210 LKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  213 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.649e-26
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.649e-26
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.649e-26
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.649e-26
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
The following BLAST results are available for this feature:
BLAST of CX299923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB21_SINAL9.669e-2798.25Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_RAPSA9.669e-2798.25Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2A_PYRPY1.263e-2696.49Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_MAIZE1.263e-2696.49Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB25_NICPL1.263e-2696.49Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_PEA1.263e-2696.49Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB48_MAIZE1.649e-2696.49Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2F_SOLLC1.649e-2696.49Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.649e-2696.49Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB23_APIGR1.649e-2696.49Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07004A10SK SaltLeaf1 Citrus clementina cDNA clone C07004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299923 ID=CX299923; Name=CX299923; organism=Citrus clementina; type=EST; length=312bp
AGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATG
TTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAA
CTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACG
CCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCT
CTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGC
TTTAATTTGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAA
AAAAAAAAAAAA
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