CX299923

Overview
NameCX299923
Unique NameCX299923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length312
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1043..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.154e-26
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.813e-26
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  212 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.813e-26
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  211 LKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.813e-26
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.813e-26
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            L+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  210 LEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.813e-26
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.674e-26
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.674e-26
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 170
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  206 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.799e-26
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.268e-26
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  172 LKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
The following BLAST results are available for this feature:
BLAST of CX299923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB27_TOBAC2.154e-2696.49Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB28_PEA2.813e-2694.74Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB25_TOBAC2.813e-2696.49Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_ARATH2.813e-2694.74Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PETSP2.813e-2696.49Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_ARATH2.813e-2694.74Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_SOYBN3.674e-2696.49Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE3.674e-2696.43Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_SPIOL4.799e-2696.49Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA6.268e-2694.74Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionC07004A10SK SaltLeaf1 Citrus clementina cDNA clone C07004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299923 ID=CX299923; Name=CX299923; organism=Citrus clementina; type=EST; length=312bp
AGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATG
TTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAA
CTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACG
CCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCT
CTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGC
TTTAATTTGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAA
AAAAAAAAAAAA
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