CX299923

Overview
NameCX299923
Unique NameCX299923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length312
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1043..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.050e-25
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.050e-25
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.050e-25
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  211 LKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.544e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.016e-24
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.707e-23
Identity = 49/57 (85.96%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.106e-22
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 170
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.219e-22
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 170
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.491e-22
Identity = 50/56 (89.29%), Postives = 50/56 (89.29%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 170
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 3
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 167
            LKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  200 LKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
The following BLAST results are available for this feature:
BLAST of CX299923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB23_ORYSJ9.050e-2591.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI9.050e-2591.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP9.050e-2591.23Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB26_PETSP1.544e-2491.23Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_POLMU2.016e-2489.47Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB215_PEA1.707e-2385.96Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC1.106e-2289.29Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU3.219e-2287.50Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_PHYPA5.491e-2289.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO8.766e-2083.64Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC07004A10SK SaltLeaf1 Citrus clementina cDNA clone C07004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299923 ID=CX299923; Name=CX299923; organism=Citrus clementina; type=EST; length=312bp
AGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATG
TTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAA
CTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACG
CCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCT
CTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGC
TTTAATTTGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAA
AAAAAAAAAAAA
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