CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ENTS8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 53/98 (54.08%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L  L+ED L+++L EPKNAL KQY+ LF++  V+L F ++AL  IAKKA ++ TGARGLR+I+E+ L E MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALEAIAKKAMSRKTGARGLRSIVEAALLETMYDLPSME 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOBL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 54/95 (56.84%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+V+L  L  + L+K+LTEPKNAL KQYK+LF +++V+L F ++AL+ IA +A  +NTGARGLRAI+E ++ E M++IP
Sbjct:  288 DLLKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKEIADEAINRNTGARGLRAIIEDMMREIMFDIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOBK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium botulinum (strain Okra / Type B1) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 54/95 (56.84%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+V+L  L  + L+K+LTEPKNAL KQYK+LF +++V+L F ++AL+ IA +A  +NTGARGLRAI+E ++ E M++IP
Sbjct:  288 DLLKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKEIADEAINRNTGARGLRAIIEDMMREIMFDIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOBJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium botulinum (strain Kyoto / Type A2) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 54/95 (56.84%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+V+L  L  + L+K+LTEPKNAL KQYK+LF +++V+L F ++AL+ IA +A  +NTGARGLRAI+E ++ E M++IP
Sbjct:  288 DLLKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKEIADEAINRNTGARGLRAIIEDMMREIMFDIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOBH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 54/95 (56.84%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+V+L  L  + L+K+LTEPKNAL KQYK+LF +++V+L F ++AL+ IA +A  +NTGARGLRAI+E ++ E M++IP
Sbjct:  288 DLLKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKEIADEAINRNTGARGLRAIIEDMMREIMFDIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOB6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium botulinum (strain 657 / Type Ba4) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 54/95 (56.84%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+V+L  L  + L+K+LTEPKNAL KQYK+LF +++V+L F ++AL+ IA +A  +NTGARGLRAI+E ++ E M++IP
Sbjct:  288 DLLKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKEIADEAINRNTGARGLRAIIEDMMREIMFDIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOB1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 54/95 (56.84%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+V+L  L  + L+K+LTEPKNAL KQYK+LF +++V+L F ++AL+ IA +A  +NTGARGLRAI+E ++ E M++IP
Sbjct:  288 DLLKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKEIADEAINRNTGARGLRAIIEDMMREIMFDIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CAUSK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Caulobacter sp. (strain K31) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DL  +GLIPEF+GR P++ +L  L E  LVK+LTEPKNA  KQY+RLF M N+ L FTE AL  +AKKA  + TGARGLR+I+E IL E M+E+P+
Sbjct:  291 DLQRFGLIPEFIGRLPVIATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDALHGVAKKAILRKTGARGLRSIMEGILLETMFELPN 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BUCAP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Buchnera aphidicola subsp. Schizaphis graminum GN=clpX PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 57/98 (58.16%), Postives = 76/98 (77.55%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR PI+  L  L E  LV++L +PKNAL KQY+ LF++  VKL FT++A+  IAKKA +K TGARGLR+I+E+IL + MYE+P +K
Sbjct:  296 DLIKFGLIPEFIGRLPIITILKELNETALVQILCKPKNALIKQYQTLFNLEKVKLEFTKEAVTSIAKKALSKKTGARGLRSIIENILLDIMYELPSMK 393          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_RHOSK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +LT L E  LV +LTEPKNAL KQY+RLF +  VKL FT  AL  IAK+A  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  290 DLLKFGLIPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAKRAIKRKTGARGLRSIMEDILLDTMFELPGLE 387          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_ENTS87.117e-2654.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOBL7.117e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOBK7.117e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOBJ7.117e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOBH7.117e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOB67.117e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOB17.117e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CAUSK7.117e-2659.38ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BUCAP7.117e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOSK9.295e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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