CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_EHRCJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Ehrlichia canis (strain Jake) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ SL+ L E  L ++L EPKN+L KQYK+LF M+N+ L F + AL  IAKKA  + TGARGLRAILE++L + M+E P
Sbjct:  284 DLVKFGLIPEFVGRIPVITSLSELNESTLCRILVEPKNSLVKQYKKLFEMDNIDLQFDDSALSEIAKKAAVRKTGARGLRAILEALLLDLMFESP 378          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOBM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 54/95 (56.84%), Postives = 77/95 (81.05%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+V+L  L  + L+K+LTEPKNAL KQYK+LF +++V+L F ++AL+ IA +A  +NTGARGLRAI+E ++ E M++IP
Sbjct:  288 DLLKFGLIPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKGIADEAINRNTGARGLRAIIEDMMREIMFDIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BRUSU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella suis GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA    TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVEHKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BRUSI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=clpX PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +L  L  D LV++LTEPKNAL KQY+RLF M NV+L F + ALR IA KA    TGARGLR+I+E IL + M+E+P ++
Sbjct:  293 DLLKFGLIPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVEHKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_TOLAT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P++ +LT L E+ L+++L EPKNAL KQY+ LF +   +L F E ALR IA KA  + TGARGLR+I+E +L + MY++P V+
Sbjct:  296 DLVKYGLIPEFIGRLPVVATLTELDENALIQILVEPKNALTKQYQALFKLEGAELEFREDALRAIAHKAMERKTGARGLRSIVEGVLLDTMYDLPSVE 393          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_THEMA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thermotoga maritima GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 51/98 (52.04%), Postives = 78/98 (79.59%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGRFP++ +L  L+ED LV++L EPKNA+ +QY++LF ++ VKL  T++ALR+IA+KA  + TGAR L+ + E ++ + M+E+P++K
Sbjct:  283 DLVQYGLIPEFVGRFPVIATLDDLSEDDLVRILKEPKNAVVRQYQKLFEIDGVKLEVTDEALRIIARKALKRGTGARALKNVFEEMMIDMMFELPNLK 380          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PEDPA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 55/95 (57.89%), Postives = 75/95 (78.95%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PIL +L  LTE+ LV +LTEPKNAL KQYK L  ++ V+L FT +AL  IA +A ++NTGARGLR+I+E+++ + M+EIP
Sbjct:  293 DLLNFGLIPEFIGRLPILSALEKLTEEDLVHILTEPKNALVKQYKTLLGLDGVELKFTPQALHAIANQAISRNTGARGLRSIIENVMRDIMFEIP 387          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCTU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium tuberculosis GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LVK+L+EPKNAL KQY RLF M+ V+L FT+ AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCTA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LVK+L+EPKNAL KQY RLF M+ V+L FT+ AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCGI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium gilvum (strain PYR-GCK) GN=clpX PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+T L ++ LVK+L+EPKNAL KQY RLF M+ V+L F E AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFAEDALEAIADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_EHRCJ9.295e-2657.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOBM9.295e-2656.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUSU9.295e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUSI9.295e-2658.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_TOLAT1.214e-2554.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_THEMA1.214e-2552.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PEDPA1.214e-2557.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCTU1.214e-2558.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCTA1.214e-2558.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCGI1.214e-2558.95ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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