CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DESAA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfatibacillum alkenivorans (strain AK-01) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEFVGR P++ +L  L E+ LV++LTEPKNAL KQ+++LF M  VKL FT+ AL  IAK A  + +GARGLRAI+E  + +  YEIP ++
Sbjct:  290 DLLKFGLIPEFVGRLPVIATLGELGEESLVRILTEPKNALVKQFQKLFEMEGVKLRFTDSALSAIAKGALDRKSGARGLRAIVEKAMLDIQYEIPSME 387
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOCE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ +GLIPEFVGR PI+V+L +L +  LV++LTEPKNAL KQY++LF M++V L   ++AL  IA+KA  +NTGARGLRAILE  +   MY+IP +
Sbjct:  289 DLLKFGLIPEFVGRLPIVVTLQSLDKKALVQILTEPKNALVKQYQKLFEMDDVLLEIQDEALEHIAEKAIERNTGARGLRAILEEAMLGVMYDIPSM 385
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CHRVO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Chromobacterium violaceum GN=clpX PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 54/98 (55.10%), Postives = 74/98 (75.51%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            D+I +GLIPE +GR P++ +L  L E+ LV +LT+PKNAL KQY++LFS+  V+L     ALRVIAK+A A+ TGARGLR+ILE  L + MYE+P ++
Sbjct:  297 DIIRFGLIPELIGRLPVVATLEELDEEALVSILTQPKNALIKQYQKLFSLETVELEVRPSALRVIAKQALARKTGARGLRSILERALLDTMYELPSMQ 394
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BACHD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bacillus halodurans GN=clpX PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 53/102 (51.96%), Postives = 79/102 (77.45%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP---DVKT 371
            DL+ +GLIPEF+GR P++ SL  L E+ L+++LT+PKNAL KQYK+L  +++V L FT++ALR IA+KA  + TGARGLR+I+E +  + M+++P   DV+T
Sbjct:  288 DLLRFGLIPEFIGRLPVISSLQPLDEEALIEILTKPKNALVKQYKKLLELDDVNLEFTDEALREIARKAIERKTGARGLRSIIEGLTLDVMFDLPARDDVET 389
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SPHWW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 54/97 (55.67%), Postives = 73/97 (75.26%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DL+ +GLIPEFVGR P++ +L  L E  LV++LT PKNAL KQY++LF M  VKL FT+ AL  IA+KA  + TGARGLR+ILE +L + M+++P +
Sbjct:  292 DLLKFGLIPEFVGRLPVIATLMDLDEAALVEILTAPKNALVKQYQKLFDMEGVKLGFTDDALVAIARKAITRKTGARGLRSILEGLLLDTMFDLPSM 388
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SALTY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salmonella typhimurium GN=clpX PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 51/98 (52.04%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L  L+E+ L+++L EPKNAL KQY+ LF++  V L F ++AL  IA+KA A+ TGARGLR+I+E+ L + MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGARGLRSIVEAALLDTMYDLPSME 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SALSV (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salmonella schwarzengrund (strain CVM19633) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 51/98 (52.04%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L  L+E+ L+++L EPKNAL KQY+ LF++  V L F ++AL  IA+KA A+ TGARGLR+I+E+ L + MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGARGLRSIVEAALLDTMYDLPSME 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SALPK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salmonella paratyphi A (strain AKU_12601) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 51/98 (52.04%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L  L+E+ L+++L EPKNAL KQY+ LF++  V L F ++AL  IA+KA A+ TGARGLR+I+E+ L + MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGARGLRSIVEAALLDTMYDLPSME 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SALPC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salmonella paratyphi C (strain RKS4594) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 51/98 (52.04%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L  L+E+ L+++L EPKNAL KQY+ LF++  V L F ++AL  IA+KA A+ TGARGLR+I+E+ L + MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGARGLRSIVEAALLDTMYDLPSME 391
[Close]
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SALPB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 51/98 (52.04%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L  L+E+ L+++L EPKNAL KQY+ LF++  V L F ++AL  IA+KA A+ TGARGLR+I+E+ L + MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIARKAMARKTGARGLRSIVEAALLDTMYDLPSME 391
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_DESAA1.028e-2455.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOCE1.028e-2457.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CHRVO1.028e-2455.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BACHD1.028e-2451.96ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SPHWW1.342e-2455.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SALTY1.342e-2452.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SALSV1.342e-2452.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SALPK1.342e-2452.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SALPC1.342e-2452.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SALPB1.342e-2452.04ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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