CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NITEU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Nitrosomonas europaea GN=clpX PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 56/99 (56.57%), Postives = 75/99 (75.76%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM-NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI YGLIPEFVGR P++ +L+ L E  L+++L EPKNAL KQY +LFSM   V+L F E+AL  IA+KA ++ TGARGLR+ILE  L + MY++P ++
Sbjct:  295 DLIKYGLIPEFVGRLPVVATLSELNEAALIQILVEPKNALIKQYNKLFSMEGGVELEFREQALVAIARKALSRKTGARGLRSILEETLLDIMYDLPSIE 393          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DEIGD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Deinococcus geothermalis (strain DSM 11300) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 53/95 (55.79%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++V L  L ED LV++LTEP+ A+ KQY+ LF    V L FTE+ALR +A +A A+ TGARGLRA+LE  +T+ ++E+P
Sbjct:  282 DLVKFGLIPEFVGRLPLVVQLQDLDEDALVRILTEPQGAIVKQYQALFGFQGVDLTFTEEALREVAHRAKARKTGARGLRAVLEKAMTDLLFELP 376          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ANOFW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 52/95 (54.74%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ SL  L ED LV +L +PKNAL KQY+++  +++V+L F E+ALR IAK+A  + TGARGLR+I+E I+ + M+E+P
Sbjct:  287 DLLKFGLIPEFVGRLPVITSLQPLDEDALVDILVKPKNALVKQYEKMLELDDVELEFEEEALREIAKRAIERKTGARGLRSIIEGIMLDVMFELP 381          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_AERHH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=clpX PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 52/97 (53.61%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI YGLIPEF+GR P++ +LT L E  L+++L EPKNAL KQY  LF +  V+L F + AL  IA+KA  + TGARGLR+I+E++L + MY++P +
Sbjct:  294 DLIKYGLIPEFIGRLPVVATLTELDEAALIQILKEPKNALTKQYAALFDLEGVELEFRDDALNAIARKAMERKTGARGLRSIVEAVLLDTMYDLPSL 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SYNP2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YG+IPEF+GR P++ SL+ L E+ LV++LT+PKNAL KQYK+L  M++V+L F   A+R IA++A  + TGAR LR I+E ++ + MYE+P  K
Sbjct:  313 DLVKYGMIPEFIGRIPVIASLSPLDEEALVEILTQPKNALVKQYKKLLKMDSVQLEFEPTAIRAIAQEAYRRKTGARALRGIVEELMLDVMYELPSRK 410          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NEOSM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Neorickettsia sennetsu (strain Miyayama) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 55/102 (53.92%), Postives = 77/102 (75.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP---DVKT 371
            DL+ +G+IPEFVGR P++  L  LTED LV++L+ PKNAL KQY  LF M+N++L F+++AL+ +A+ A  +  GARGLRAI+ES+L   M+E+P   DVKT
Sbjct:  284 DLVKFGMIPEFVGRLPVIGVLDELTEDNLVEILSVPKNALVKQYVCLFGMDNIQLSFSDEALKTVARAAIKRKVGARGLRAIMESVLRNYMFELPSNKDVKT 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MAGSA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P+L +L  L  D L+ +L++PKNAL KQY+RLF M + +L F++ AL+ IA+KA A+ TGARGLR+I+E+IL + M+++P
Sbjct:  291 DLLKFGLIPEFVGRLPVLATLEDLDVDALIDILSKPKNALVKQYQRLFEMEDTRLAFSDDALKAIAEKAIARKTGARGLRSIMETILLDTMFDLP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LACLS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 52/95 (54.74%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            D+  +GLIPEF+GR PI+ +L  LTE+ L+++LTEPKNAL KQYK+L   +NV+L F + AL  IAKKA  + TGARGLR+I+E ++ + M+E+P
Sbjct:  287 DIQKFGLIPEFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFKDGALMAIAKKAIERKTGARGLRSIIEEVMMDIMFEVP 381          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LACLM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 52/95 (54.74%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            D+  +GLIPEF+GR PI+ +L  LTE+ L+++LTEPKNAL KQYK+L   +NV+L F + AL  IAKKA  + TGARGLR+I+E ++ + M+E+P
Sbjct:  287 DIQKFGLIPEFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFKDGALMAIAKKAIERKTGARGLRSIIEEVMMDIMFEVP 381          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LACLA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Lactococcus lactis subsp. lactis GN=clpX PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 51/95 (53.68%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            D+  +GLIPEF+GR PI+ +L  LTE+ L+++LTEPKNAL KQYK+L   +NV+L F ++AL  IA+KA  + TGARGLR+I+E ++ + M+E+P
Sbjct:  287 DIQKFGLIPEFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVP 381          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_NITEU1.342e-2456.57ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DEIGD1.342e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ANOFW1.342e-2454.74ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AERHH1.342e-2453.61ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SYNP21.753e-2452.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NEOSM1.753e-2453.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MAGSA1.753e-2454.74ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LACLS1.753e-2454.74ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LACLM1.753e-2454.74ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LACLA1.753e-2453.68ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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