CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_GEOSM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Geobacter sp. (strain M21) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 54/95 (56.84%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +G IPEFVGR P+L SL+ L E+ +V++L EPKNAL KQY++LF M +VKL FT+ +L  IA++A  + TGARGLR+ILE+ + + MYEIP
Sbjct:  291 DLLKFGFIPEFVGRLPMLASLSELDEEAMVQILKEPKNALIKQYQKLFDMEHVKLKFTDGSLVAIAREALKRKTGARGLRSILENAMLDIMYEIP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_GEOBB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 54/95 (56.84%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +G IPEFVGR P+L SL+ L E+ +V++L EPKNAL KQY++LF M +VKL FT+ +L  IA++A  + TGARGLR+ILE+ + + MYEIP
Sbjct:  291 DLLKFGFIPEFVGRLPMLASLSELDEEAMVQILKEPKNALIKQYQKLFDMEHVKLKFTDGSLVAIAREALKRKTGARGLRSILENAMLDIMYEIP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CORGB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Corynebacterium glutamicum (strain R) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 53/96 (55.21%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DL+ +GLIPEF+GR P++ +++ L +  LVKVLTEP+N+L KQY+RLF M++  L FT+ AL  IA +A  + TGARGLRAI+E IL   MY++PD
Sbjct:  299 DLVKFGLIPEFIGRLPVVATVSNLDQKSLVKVLTEPRNSLVKQYQRLFEMDDAVLTFTDDALEEIANQALERKTGARGLRAIMEEILVPIMYDLPD 394          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOK5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 53/95 (55.79%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR PI+V+L AL    L+ +L EPKNAL KQYK+LF +++V+L F ++AL  IA +A  +NTGARGLRAI+E  + + M++IP
Sbjct:  289 DLLKFGLIPEFVGRIPIIVTLEALDRAALISILKEPKNALVKQYKKLFELDDVELEFKDEALEAIADEALKRNTGARGLRAIIEETMKDVMFDIP 383          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOK1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium kluyveri (strain NBRC 12016) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 53/95 (55.79%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR PI+V+L AL    L+ +L EPKNAL KQYK+LF +++V+L F ++AL  IA +A  +NTGARGLRAI+E  + + M++IP
Sbjct:  291 DLLKFGLIPEFVGRIPIIVTLEALDRAALISILKEPKNALVKQYKKLFELDDVELEFKDEALEAIADEALKRNTGARGLRAIIEETMKDVMFDIP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PHOLL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Photorhabdus luminescens subsp. laumondii GN=clpX PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEF+GR P++ +L+ L+E+ L+++L EPKNAL KQY+ LF++  V L F  +AL  IAKKA  + TGARGLR+I+E  L + MY++P ++
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRSEALTAIAKKAMVRKTGARGLRSIVEGALLDTMYDLPSME 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_GRABC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++ +L  L E  L+++LT+PKNAL KQY RLF M  V L FT+ AL+ +A +A A+ TGARGLR+ILE IL   MY++P ++
Sbjct:  291 DLLRFGLIPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYGRLFEMEGVSLSFTDDALKSVANRAIARKTGARGLRSILEGILLGTMYDLPGME 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_EUBR3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 371
            D + +GLIPEF+GR PI VSL AL  D L+++L EPKN+L KQY +LF ++ V L FT+ A+  IA KA  + TGARGLRAI+E+++ + MY IP  K+
Sbjct:  292 DFVKFGLIPEFIGRVPITVSLEALDRDALIRILKEPKNSLIKQYTKLFELDGVGLEFTDDAVNAIADKALERKTGARGLRAIMEAVMLDLMYRIPSDKS 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_EHRRW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Ehrlichia ruminantium (strain Welgevonden) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 53/95 (55.79%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ SL  L E  L ++L EPKN+L KQYK+LF M+N+ L F + AL  IA+KA  +  GARGLRAILE++L + M+E P
Sbjct:  284 DLVKFGLIPEFVGRIPVITSLGELDEATLCRILVEPKNSLVKQYKKLFEMDNINLEFDDSALSEIARKAAVRKAGARGLRAILENLLLDLMFETP 378          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_EHRRG (ATP-dependent Clp protease ATP-binding subunit clpX OS=Ehrlichia ruminantium (strain Gardel) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 53/95 (55.79%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ SL  L E  L ++L EPKN+L KQYK+LF M+N+ L F + AL  IA+KA  +  GARGLRAILE++L + M+E P
Sbjct:  284 DLVKFGLIPEFVGRIPVITSLGELDEATLCRILVEPKNSLVKQYKKLFEMDNINLEFDDSALSEIARKAAVRKAGARGLRAILENLLLDLMFETP 378          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_GEOSM1.753e-2456.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GEOBB1.753e-2456.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CORGB1.753e-2455.21ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOK51.753e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOK11.753e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PHOLL2.290e-2452.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GRABC2.290e-2454.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_EUBR32.290e-2453.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_EHRRW2.290e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_EHRRG2.290e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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