CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CYAP7 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Cyanothece sp. (strain PCC 7424) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 51/98 (52.04%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +G+IPEFVGR P++ SL  L ED L+ +LT+P+NAL KQY++L  M+NV+L F  +A+R IA++A  + TGAR LR I+E ++ E MYE+P  K
Sbjct:  317 DLVKFGMIPEFVGRIPVMASLDPLDEDALIAILTQPRNALVKQYQKLLKMDNVQLEFKSEAVRAIAQEAYRRKTGARALRGIVEELMLEVMYELPSRK 414          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ALKMQ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Alkaliphilus metalliredigens (strain QYMF) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 51/95 (53.68%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++V+L  L E  L+++LTEPKNAL KQYK+LF ++ V + F  +AL++IA+KA  + TGARGLR I+E ++ + MY++P
Sbjct:  288 DLLKFGLIPEFVGRLPVIVTLDQLDEAALIEILTEPKNALVKQYKKLFEIDGVNVEFEGEALKLIAEKAIERKTGARGLRGIVEGLMMDIMYDVP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_AERS4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Aeromonas salmonicida (strain A449) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI YGLIPEF+GR P++ +LT L E  L+++L EPKNAL KQY  LF +  V+L F + AL  IA KA  + TGARGLR+I+E++L + MY++P ++
Sbjct:  294 DLIKYGLIPEFIGRLPVVATLTELDEAALIQILKEPKNALTKQYAALFDLEGVELEFRDDALNAIAHKAMERKTGARGLRSIVEAVLLDTMYDLPSLE 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEPA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 50/95 (52.63%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P+L +L+ L ++ L+++L+EPKNA+ KQ+  LF M NV+L F + AL+ IA KA  + TGARGLR+I+E IL + MY++P
Sbjct:  295 DLVKFGLIPEFIGRLPVLATLSELDDEALIQILSEPKNAITKQFAALFEMENVELEFRDDALKAIALKAQTRKTGARGLRSIVEGILLDIMYDLP 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHELP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P+L +L  L E  L+++L+EPKNAL KQ+  LF M  V+L F E AL+ IA KA  + TGARGLR+I+E IL + MY++P  +
Sbjct:  295 DLVKYGLIPEFIGRLPVLATLAELDEAALIQILSEPKNALTKQFAALFEMEGVELEFREDALKAIALKAMDRKTGARGLRSIVEGILLDIMYDLPSTE 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEHH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella halifaxensis (strain HAW-EB4) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 50/95 (52.63%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P+L +L+ L ++ L+++L+EPKNA+ KQ+  LF M NV+L F + AL+ IA KA  + TGARGLR+I+E IL + MY++P
Sbjct:  295 DLVKFGLIPEFIGRLPVLATLSELDDEALIQILSEPKNAITKQFAALFEMENVELEFRDDALKAIALKAQTRKTGARGLRSIVEGILLDIMYDLP 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CYAA5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Cyanothece sp. (strain ATCC 51142) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 49/98 (50.00%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +G+IPEFVGR P++ +L  LTE+ LV +LT+P+NAL KQY++L +M+NV+L F+++A++ IA++A  + TGAR LR I+E ++ + MYE+P  K
Sbjct:  305 DLVKFGMIPEFVGRIPVMAALNPLTEETLVAILTKPRNALVKQYQKLLNMDNVELEFSQEAVKAIAQEAYRRKTGARALRGIVEELMLDVMYELPSRK 402          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ANAMM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Anaplasma marginale (strain St. Maries) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 53/92 (57.61%), Postives = 71/92 (77.17%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 350
            DL+ +GLIPEFVGR P++ SL  L E+ L ++L EPKN+L KQY +LF M+N++L F   AL  +AKKA A+NTGARGLRAI+ES+L + M+
Sbjct:  284 DLVKFGLIPEFVGRIPVVTSLGRLDEETLYRILVEPKNSLVKQYTKLFEMDNLELKFDNAALLAVAKKAVARNTGARGLRAIMESLLLDFMF 375          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ANAMF (ATP-dependent Clp protease ATP-binding subunit clpX OS=Anaplasma marginale (strain Florida) GN=clpX PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 53/92 (57.61%), Postives = 71/92 (77.17%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 350
            DL+ +GLIPEFVGR P++ SL  L E+ L ++L EPKN+L KQY +LF M+N++L F   AL  +AKKA A+NTGARGLRAI+ES+L + M+
Sbjct:  284 DLVKFGLIPEFVGRIPVVTSLGRLDEETLYRILVEPKNSLVKQYTKLFEMDNLELKFDNAALLAVAKKAVARNTGARGLRAIMESLLLDFMF 375          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SHEWM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ YGLIPEF+GR P+L +L  L +  L+++L+EPKNAL KQ+  LF M +V+L F E AL+ IA KA  + TGARGLR+I+E IL + MY++P
Sbjct:  295 DLVKYGLIPEFIGRLPVLATLAELDDAALIQILSEPKNALTKQFAALFEMEDVELEFREDALKAIALKAKTRKTGARGLRSIVEGILLDIMYDLP 389          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_CYAP72.290e-2452.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ALKMQ2.290e-2453.68ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AERS42.290e-2453.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEPA2.990e-2452.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHELP2.990e-2454.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEHH2.990e-2452.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CYAA52.990e-2450.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ANAMM2.990e-2457.61ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ANAMF2.990e-2457.61ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEWM3.905e-2454.74ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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