CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PROMH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Proteus mirabilis (strain HI4320) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ +L  L ED L+++L EPKNAL KQY+ LF +  V L F + AL  IAKKA ++ TGARGLR+I+E+ L + MY++P
Sbjct:  294 DLIKFGLIPEFIGRLPVVATLGELNEDALIQILQEPKNALTKQYQALFKLEGVDLEFRKDALTAIAKKAMSRKTGARGLRSIVEAALLDTMYDLP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYXXA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Myxococcus xanthus GN=clpX PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 52/99 (52.53%), Postives = 72/99 (72.73%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 371
            DL+ +G+IPEF+GR PI+ +L  L E  L+ +L +PKNAL KQY++LF ++ V L FT+ AL+ IA +A  +  GARGLR+ILES + + MYEIP  KT
Sbjct:  293 DLLKFGMIPEFIGRLPIITALEELDEAALINILNQPKNALTKQYRKLFELDGVTLKFTDGALKAIANEAIRRKAGARGLRSILESAMLDVMYEIPSRKT 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_METPP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylibium petroleiphilum (strain PM1) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 53/95 (55.79%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPE VGR P++ +L  LTED +V++LTEPKNAL KQY++LF+M+ V+L     AL  IA+KA A+ TGARGLR+I+E  L + M+++P
Sbjct:  297 DLIKFGLIPELVGRLPVVATLGELTEDAMVQILTEPKNALVKQYQKLFAMDGVELEIRPSALTAIAQKALARKTGARGLRSIMEHSLMDTMFDLP 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_GEOTN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Geobacillus thermodenitrificans (strain NG80-2) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 50/95 (52.63%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E  L+ +LT+PKNA+ KQYK++  ++ V+L F E ALR IAKKA  + TGARGLR+I+E I+ + M+E+P
Sbjct:  288 DLLKFGLIPEFIGRLPVITTLEPLDEQALIDILTKPKNAIVKQYKKMLELDGVELEFEEAALREIAKKAIERKTGARGLRSIIEGIMLDVMFELP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_GEOSW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Geobacillus sp. (strain WCH70) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 51/95 (53.68%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ +L  L E  LV +LT+PKNA+ KQY+++  ++ V+L F E+ALR IAKKA  + TGARGLR+I+E I+ + M+E+P
Sbjct:  288 DLLKFGLIPEFVGRLPVITTLEPLDEQALVDILTKPKNAIVKQYQKMLELDGVELEFEEEALREIAKKAIERKTGARGLRSIIEGIMLDVMFELP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CORDI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Corynebacterium diphtheriae GN=clpX PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DL+ +GLIPEF+GR PI+ ++  L +  LVKVLTEP+N+L KQY+RLF M+ V L F  +AL+ IA  A  + TGARGLRAI+E +L   MY+IPD
Sbjct:  300 DLVKFGLIPEFIGRLPIVATVNNLDQASLVKVLTEPRNSLVKQYQRLFDMDRVDLEFDPEALQAIADLAIDRGTGARGLRAIMEELLVPVMYDIPD 395          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CLOPH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 51/95 (53.68%), Postives = 75/95 (78.95%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +G+IPEFVGR P+  +L  L E  LV++LTEPKNA+ KQY++LF ++ V+L F E AL+ IAK++  + TGARGLRAI+ES++ ++M+++P
Sbjct:  291 DLIKFGMIPEFVGRVPVNTALDLLDEQALVRILTEPKNAITKQYRKLFELDGVELVFEEDALKEIAKRSFERKTGARGLRAIMESVMMDSMFKVP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_AZOSE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Azoarcus sp. (strain EbN1) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPEFVGR P++ +L  L E+ L+++L EPKNAL KQY++LFSM  V L     AL  +A+KA  + TGARGLR+ILES L + MY++P ++
Sbjct:  293 DLIKFGLIPEFVGRLPVVATLQELDEEALIQILVEPKNALVKQYQKLFSMEGVDLEIRPAALHAVARKAIRRKTGARGLRSILESALLDIMYDLPTLE 390          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_AZOC5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=clpX PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEF+GR P+L +L  L E  L ++L EPKNAL KQY+RLF M NV L   E+AL  IA+KA  + TGARGLR+I+E IL + M+++P ++
Sbjct:  292 DLLKYGLIPEFIGRLPVLATLNDLDEAALKQILAEPKNALVKQYQRLFEMENVDLTIHEEALGAIARKAIERKTGARGLRSIMEGILLDTMFDLPGLE 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_STRMU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus mutans GN=clpX PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 53/95 (55.79%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            D+  +GLIPEF+GR P+L +L  LT D LVK+LTEPKNAL KQY+ L S + V+L F ++AL+ IA+KA  + TGARGLR+I+E  + + M+EIP
Sbjct:  289 DIQKFGLIPEFIGRLPVLAALEQLTVDDLVKILTEPKNALVKQYQTLLSYDGVELEFDQEALQAIAQKAIERKTGARGLRSIIEETMLDLMFEIP 383          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_PROMH3.905e-2454.74ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYXXA3.905e-2452.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METPP3.905e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GEOTN3.905e-2452.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GEOSW3.905e-2453.68ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CORDI3.905e-2456.25ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOPH3.905e-2453.68ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AZOSE3.905e-2454.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AZOC53.905e-2455.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRMU5.101e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
back to top