CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BACAA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bacillus anthracis (strain A0248) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 52/98 (53.06%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++ +L  L ED LV +LT+PKNAL KQ+++L  +++V+L F E AL  IAKKA  + TGARGLR+I+E ++ E M+E+P  K
Sbjct:  288 DLLRFGLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERKTGARGLRSIIEGLMLEVMFELPSRK 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BACA2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bacillus amyloliquefaciens (strain FZB42) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 50/95 (52.63%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ SL  L E  LV++LT+PKNAL KQYK++  +++V+L F ++AL  IAKKA  + TGARGLR+I+E I+ + M+++P
Sbjct:  288 DLLRFGLIPEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELDDVELEFEDEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ANAPZ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Anaplasma phagocytophilum (strain HZ) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 52/93 (55.91%), Postives = 72/93 (77.42%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 353
            DL+ +GLIPEF+GR P++ SL  L E+ L +VL EPKN+L KQY +LF M+N++L F + AL  IA+KA  +NTGARGLRAI+ES+L + M++
Sbjct:  284 DLVKFGLIPEFIGRIPVITSLGKLDENTLFRVLVEPKNSLVKQYAKLFEMDNLELKFDDDALMAIARKAVDRNTGARGLRAIMESLLLDFMFD 376          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_ACISJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acidovorax sp. (strain JS42) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 54/97 (55.67%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPE VGR P++ +L  L+ED LV++LTEPKNAL KQY +L +M  V+L     AL+ IA+KA A+ TGARGLR+ILE  L   M+++P+V
Sbjct:  295 DLIKFGLIPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKSIARKAIARKTGARGLRSILEQALIGTMFDLPNV 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_TERTT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ YGLIPEFVGR P++ +L  L ++ LV +L EPKN+L KQY +LF M NV++ F   AL  +A+KA  + TGARGLR+I+E++L + MY++P
Sbjct:  298 DLVRYGLIPEFVGRLPVIATLDELDKEALVTILREPKNSLVKQYAKLFEMENVEVDFRADALEAVAEKAMVRKTGARGLRSIMENVLLDTMYKLP 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SACD2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 50/95 (52.63%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ YGLIPEFVGR P++ +L  L +D LV++L EPKN+L KQY +LF M   ++ F + AL  +A KA  + TGARGLR+I+E++L + MY+IP
Sbjct:  298 DLVRYGLIPEFVGRLPVIATLDELDQDALVRILKEPKNSLVKQYSKLFEMEGSEVDFRDDALEAVANKAMERKTGARGLRSIMENVLLDTMYKIP 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PSYWF (ATP-dependent Clp protease ATP-binding subunit clpX OS=Psychrobacter sp. (strain PRwf-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 365
            DLI +GLIPE +GR P++ +L  L E+ L+++LTEPKNA+ KQY+ LF M + +L FTE  L+ IA KA  + TGARGLR+I+E+ L + MYE+P +
Sbjct:  307 DLIKFGLIPELIGRLPVIATLEELDEEALMQILTEPKNAIVKQYQYLFEMEDAELSFTEAGLKAIAHKAMERKTGARGLRSIVENALLDTMYELPSM 403          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NOVAD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ +L  L  + LVK+L EPKNAL KQY +LF + +V L FT+ AL  IAKKA  + TGARGLR+I+E +L + M+++P
Sbjct:  292 DLLKFGLIPEFVGRLPVIATLNDLDIEALVKILKEPKNALVKQYAKLFELEDVTLTFTDDALEAIAKKAIERKTGARGLRSIVEGLLLDTMFDVP 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MARMS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Marinomonas sp. (strain MWYL1) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 52/95 (54.74%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEFVGR P++ +L+ L E+ L+ +L++PKNAL KQY+ LF +  V+L FT ++LR  AK A  + TGARGLR+ILES L + MYE+P
Sbjct:  298 DLVKFGLIPEFVGRLPVVATLSELDEEALMTILSQPKNALVKQYQHLFELEGVELEFTPESLREAAKLALERKTGARGLRSILESALLDCMYELP 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LISW6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E  LV +LTEPKNAL KQYKR+  +++V+L F   AL  IAK+A  + TGARGLR+I+E I+ E M+EIP
Sbjct:  288 DLLKFGLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEAIERKTGARGLRSIIEQIMLEVMFEIP 382          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_BACAA6.662e-2453.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BACA26.662e-2452.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ANAPZ6.662e-2455.91ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACISJ6.662e-2455.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_TERTT8.700e-2452.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SACD28.700e-2452.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSYWF8.700e-2452.58ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NOVAD8.700e-2454.74ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MARMS8.700e-2454.74ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LISW68.700e-2455.79ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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