CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_TREDE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Treponema denticola GN=clpX PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 49/98 (50.00%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPE +GR PI V+L  LT++ L ++L EPKNA+ KQ++  F ++NV LHF + A+  IA++A  +NTGARGLR+I+E ++ +AM+E P +K
Sbjct:  289 DLVKFGLIPELIGRIPIKVALNELTKEDLTRILVEPKNAIIKQFQATFKLDNVDLHFDKDAITAIAQQAIDQNTGARGLRSIVEKLMLDAMFEAPSIK 386          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_STRTD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 51/98 (52.04%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            D+  +GLIPEF+GR P+L +L  LT D LV++LTEP+NAL KQY+ L S + V+L F + AL  IA KA  + TGARGLR+I+E ++ + M+EIP ++
Sbjct:  288 DIQKFGLIPEFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKAIERKTGARGLRSIIEEVMMDVMFEIPSLE 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_STRT2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 51/98 (52.04%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            D+  +GLIPEF+GR P+L +L  LT D LV++LTEP+NAL KQY+ L S + V+L F + AL  IA KA  + TGARGLR+I+E ++ + M+EIP ++
Sbjct:  288 DIQKFGLIPEFIGRLPVLATLEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKAIERKTGARGLRSIIEEVMMDVMFEIPSLE 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_STRT1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus thermophilus (strain CNRZ 1066) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 51/98 (52.04%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            D+  +GLIPEF+GR P+L +L  LT D LV++LTEP+NAL KQY+ L S + V+L F + AL  IA KA  + TGARGLR+I+E ++ + M+EIP ++
Sbjct:  288 DIQKFGLIPEFIGRLPVLATLEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKAIERKTGARGLRSIIEEVMMDVMFEIPSLE 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_PELCD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEFVGR P++ +L  L E+ LV++L EPKNAL KQY++LF M  V L FT+ AL  +A +A  + TGARGLR+I+E+ + + MY+IP
Sbjct:  291 DLIRFGLIPEFVGRLPVVATLEELDEESLVRILKEPKNALVKQYQKLFEMEKVHLKFTDGALVAVAAEALKRKTGARGLRSIIENAMLDVMYDIP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCLE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium leprae GN=clpX PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 53/95 (55.79%), Postives = 69/95 (72.63%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+  L  + LVK+L+EPKNAL KQY  LF M+ V+L FT  AL  +A +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVIASVINLDMESLVKILSEPKNALVKQYTWLFEMDGVELEFTNDALEAVADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_MYCLB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Mycobacterium leprae (strain Br4923) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 53/95 (55.79%), Postives = 69/95 (72.63%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DLI +GLIPEF+GR P++ S+  L  + LVK+L+EPKNAL KQY  LF M+ V+L FT  AL  +A +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  294 DLIKFGLIPEFIGRLPVIASVINLDMESLVKILSEPKNALVKQYTWLFEMDGVELEFTNDALEAVADQAIHRGTGARGLRAIMEEVLLPVMYDIP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LACS1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 52/95 (54.74%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PIL +L  LTE+ LV++LTEPKNAL KQY++L S ++V L F + A++ IA  A  +NTGARGLR+I+E+ + + M++IP
Sbjct:  289 DLLKFGLIPEFIGRLPILTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVSLKFEDDAVKEIAHLAIERNTGARGLRSIVEATMRDIMFDIP 383          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_KINRD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=clpX PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 48/95 (50.53%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR PI+ S+  L ++ LV++LT+P+NAL KQY+R+F ++ V+L FT+ AL  +A +A  + TGARGLRAI+E +L   M+++P
Sbjct:  294 DLMKFGLIPEFIGRLPIITSVENLDQEALVQILTKPRNALAKQYQRMFELDGVELEFTDDALEAVADQAILRGTGARGLRAIIEEVLLPVMFDVP 388          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_GEOKA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Geobacillus kaustophilus GN=clpX PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 49/95 (51.58%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +GLIPEF+GR P++ +L  L E  L+ +LT+PKNA+ KQY+++  ++ V+L F E ALR IAKKA  + TGARGLR+I+E I+ + M+E+P
Sbjct:  288 DLLKFGLIPEFIGRLPVITTLEPLDEQALIDILTKPKNAIVKQYQKMLELDGVELEFEEAALREIAKKAIERKTGARGLRSIIEGIMLDVMFELP 382          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_TREDE1.136e-2350.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRTD1.136e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRT21.136e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRT11.136e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PELCD1.136e-2354.74ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCLE1.136e-2355.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYCLB1.136e-2355.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LACS11.136e-2354.74ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_KINRD1.136e-2350.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GEOKA1.136e-2351.58ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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