CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LEGPA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Legionella pneumophila (strain Paris) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI YGLIPEFVGR P++ +L  L E  L+ +LT PKNAL KQ++ LF M   +L F ++AL  IAKKA  +  GARGLR+ILE+IL + MY++P ++
Sbjct:  292 DLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRDEALIAIAKKALERKMGARGLRSILENILLDTMYDLPSLE 389          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_LACH4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Lactobacillus helveticus (strain DPC 4571) GN=clpX PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +G+IPEF+GR PI+ +L  L+ + LV+VLTEPKNAL KQYK+L S++ V L FT+ AL+ IA  A  +N GARGLR I+E+ + + MY+ P  K
Sbjct:  288 DLVKFGMIPEFIGRIPIITTLDNLSSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIADLAIQRNMGARGLRTIIENSIMDIMYKTPSEK 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_HUMAN (ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 52/96 (54.17%), Postives = 74/96 (77.08%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 362
            DLI +G+IPEFVGR P++V L +L E  LV++LTEP+NA+  QY+ LFSM+  +L+ TE AL+ IA+ A  + TGARGLR+I+E +L E M+E+P+
Sbjct:  486 DLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGARGLRSIMEKLLLEPMFEVPN 581          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_CAMJE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Campylobacter jejuni GN=clpX PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.938e-23
Identity = 49/98 (50.00%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPE +GR  ++ SL  L E+ +V++LTEPKNA+ KQY++LF+++ V L F E ALR IA+ A  + TGARGLR+I+E ++ + M+E+P+ K
Sbjct:  295 DLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYK 392          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_STACT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Staphylococcus carnosus (strain TM300) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL +YGLIPEF+GR PI+ +L  L    L  +LT+PKNAL KQYK++  +++V+L FTE+AL  IA+KA  + TGARGLR+I+E  L E MY+IP
Sbjct:  288 DLQSYGLIPEFIGRIPIVANLETLDIAALKNILTQPKNALVKQYKKMLELDHVELEFTEEALTAIAEKAIERKTGARGLRSIIEESLIEIMYDIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SALTO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 48/95 (50.53%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            D++ +GLIPEF+GR P++ ++ +L    LV++LTEP+NAL +QY+RLF ++ V+L F + AL  IA +A  + TGARGLRAI+E +L   MYE+P
Sbjct:  293 DMLKFGLIPEFIGRLPVITNVRSLDRPALVQILTEPRNALVRQYQRLFELDGVELEFEQSALEAIADQAMLRGTGARGLRAIMEEVLLSVMYEVP 387          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_SALAI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Salinispora arenicola (strain CNS-205) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 47/95 (49.47%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            D++ +GLIPEF+GR P++ ++ +L    LV++LTEP+NAL +QY+RLF ++ V+L F + AL  +A +A  + TGARGLRAI+E +L   MYE+P
Sbjct:  293 DMLKFGLIPEFIGRLPVITNVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFEQPALEAVADQAMLRGTGARGLRAIMEEVLLSVMYEVP 387          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_NITMU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 51/99 (51.52%), Postives = 75/99 (75.76%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM-NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ YGLIPEFVGR P++ +L  L E  L+++LTEP+NAL KQY+++F M   + L F E+AL+ IA+KA  + TGARGLR+ILE+ L + M+++P ++
Sbjct:  295 DLVKYGLIPEFVGRLPVVATLEELDEAALIQILTEPRNALIKQYQKMFHMEGGIDLEFREQALKAIARKALVRKTGARGLRSILEAALLDTMFDLPSLE 393          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_GEOSL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Geobacter sulfurreducens GN=clpX PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 51/95 (53.68%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL+ +G IPEF+GR P+L +L  L E  +V++L EPKNAL KQY++LF M +VKL FT+ +L  I+++A  + TGARGLR+ILE+ + + MYEIP
Sbjct:  291 DLLKFGFIPEFIGRLPVLATLRELDETAMVQILKEPKNALIKQYQKLFEMEHVKLKFTDGSLVAISREALKRKTGARGLRSILENAMLDIMYEIP 385          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURP8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=clpX PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY +LF+M  V+L     AL+ IA+KA  + TGARGLR+ILE  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDETALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAIARKAIRRKTGARGLRSILEQALLDVMYELPAMK 391          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_LEGPA1.938e-2354.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_LACH41.938e-2353.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HUMAN1.938e-2354.17ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CAMJE1.938e-2350.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STACT2.531e-2355.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SALTO2.531e-2350.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SALAI2.531e-2349.47ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NITMU2.531e-2351.52ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GEOSL2.531e-2353.68ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURP82.531e-2354.08ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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