CX299937

Overview
NameCX299937
Unique NameCX299937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURVG (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY +LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTMK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURM1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY +LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTMK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 49/95 (51.58%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL +YGLIPEF+GR PI+ +L  L  + L  +LT+PKNAL KQY ++  ++NV+L FTE+AL  +++KA  + TGARGLR+I+E  L + MY++P
Sbjct:  288 DLQSYGLIPEFIGRVPIVANLETLDVEALKNILTQPKNALVKQYTKMLELDNVELEFTEEALAAVSEKAIERKTGARGLRSIIEEALIDIMYDVP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_EXIS2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 51/95 (53.68%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 359
            DL  +GLIPEF+GR P++ +L  L E+ LV++LT+PKNAL KQYK++  +++V+L FTE AL  IAK A  + TGARGLR+I+E  + + M+EIP
Sbjct:  288 DLQKFGLIPEFIGRLPVMATLEPLDEEALVQILTKPKNALVKQYKKMLQLDDVELDFTEDALVEIAKLAIERKTGARGLRSIIEETMLDIMFEIP 382          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DESVV (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 46/98 (46.94%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++  +  L E+ L+++LTEPKNAL +QY++LF ++ V L FT  AL+ IA +A  + TGARGLR ++E+++ + MY +P ++
Sbjct:  290 DLVKFGLIPEFIGRIPVVTHVDELGEEDLIRILTEPKNALVRQYQKLFELDKVTLRFTANALKSIASQAIERKTGARGLRNVMENVMLDIMYSLPTLE 387          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_DESVH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 46/98 (46.94%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DL+ +GLIPEF+GR P++  +  L E+ L+++LTEPKNAL +QY++LF ++ V L FT  AL+ IA +A  + TGARGLR ++E+++ + MY +P ++
Sbjct:  290 DLVKFGLIPEFIGRIPVVTHVDELGEEDLIRILTEPKNALVRQYQKLFELDKVTLRFTANALKSIASQAIERKTGARGLRNVMENVMLDIMYSLPTLE 387          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURXL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia xenovorans (strain LB400) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY +LF+M  V+L     AL+ +A+KA  + TGARGLR+ILE  L + MY++P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEVALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAVARKAIRRKTGARGLRSILEQALLDVMYDLPQMK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURS3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia sp. (strain 383) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY +LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTMK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURPP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY +LF+M  V+L     AL+ +A+KA  + TGARGLR+ILE  L + MY++P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEVALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAVARKAIRRKTGARGLRSILEQALLDVMYDLPQMK 391          
BLAST of CX299937 vs. ExPASy Swiss-Prot
Match: CLPX_BURCJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=clpX PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   75 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 368
            DLI +GLIPE +GR P++ +L  L E  L+K+L EPKNAL KQY +LF+M  V+L     AL+ +A+KA  + TGARGLR+I+E  L + MYE+P +K
Sbjct:  294 DLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVARKAIRRKTGARGLRSIIEQALLDVMYELPTMK 391          
The following BLAST results are available for this feature:
BLAST of CX299937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_BURVG5.639e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURM15.639e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STAHJ7.365e-2351.58ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_EXIS27.365e-2353.68ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DESVV7.365e-2346.94ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DESVH7.365e-2346.94ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURXL7.365e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURS37.365e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURPP7.365e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BURCJ7.365e-2352.04ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07004C01SK SaltLeaf1 Citrus clementina cDNA clone C07004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299937 ID=CX299937; Name=CX299937; organism=Citrus clementina; type=EST; length=702bp
GGCTGCACGAATTCGGCACGAGGGTAACTGATGCTGCAGTGACATCGTCT
TTGCTTGAATCGGTTGAAAGTTCTGATCTCATTGCATATGGTCTCATACC
AGAATTTGTCGGACGATTTCCAATATTAGTTAGCTTGACAGCACTAACAG
AGGACCAACTTGTTAAGGTCCTCACAGAACCAAAAAATGCTCTGGGTAAG
CAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACATTTTACTGA
AAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGAATACTGGTG
CCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAAGCCATGTAT
GAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGCTGTTGTGGT
AGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCGGAGGGAAAA
TTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAAGCCGAGCGG
AAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGAGAGTGAAGC
AGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGCACCACGATG
ATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTAGAAATCATA
TTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGTTCTTGAATT
CG
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