CX299938

Overview
NameCX299938
Unique NameCX299938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299938_ssr448 microsatellite CX299938_ssr448:448..462. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4991 contig Ccv1_Contig4991:537..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.663e-19
Identity = 59/126 (46.83%), Postives = 76/126 (60.32%), Query Frame = 1 
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      ++  IW ++V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  126 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 247
[Close]
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.262e-18
Identity = 59/126 (46.83%), Postives = 76/126 (60.32%), Query Frame = 1 
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      ++  IW ++V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
[Close]
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.153e-18
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HLSDP++
Sbjct:  133 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVN 254
[Close]
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.153e-18
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
[Close]
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.153e-18
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  131 WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
[Close]
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.811e-18
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
[Close]
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.811e-18
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
[Close]
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.811e-18
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
[Close]
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.811e-18
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  131 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
[Close]
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.811e-18
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  132 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
The following BLAST results are available for this feature:
BLAST of CX299938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_ORYSJ9.663e-1946.83Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ1.262e-1846.83Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB28_PEA2.153e-1846.03Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_TOBAC2.153e-1846.03Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_PETSP2.153e-1846.03Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2B_SOLLC2.811e-1846.03Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL2.811e-1846.03Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_TOBAC2.811e-1846.03Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP2.811e-1846.03Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_PETSP2.811e-1846.03Chlorophyll a-b binding protein 22R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionC07004C02SK SaltLeaf1 Citrus clementina cDNA clone C07004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299938 ID=CX299938; Name=CX299938; organism=Citrus clementina; type=EST; length=575bp
ACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGA
GTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCTCAATAA
CAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAA
AGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTT
TTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTC
AATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATTCCTTGGC
TTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACAACTGGGC
TACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACCTTCATCT
CTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACTATTGTTA
TTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTATAACATTTGAC
AGCTTAAGGGGAATGCTATGGCTTCATATTTTGAAGTCATTTCATCTTTG
CAGAAAAAAAAAAAAAAAAAAAAAA
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