CX299938

Overview
NameCX299938
Unique NameCX299938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299938_ssr448 microsatellite CX299938_ssr448:448..462. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4991 contig Ccv1_Contig4991:537..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.925e-17
Identity = 55/124 (44.35%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 369
            W  AG     +G  +YLG P      +I   + ++V+++G +E  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLAM A LGF VQA+VTGKGP+ N   HL++P
Sbjct:  139 WFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.925e-17
Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+ P++
Sbjct:  128 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVN 249          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.044e-17
Identity = 54/125 (43.20%), Postives = 74/125 (59.20%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 372
            W  AG     EG   YLG P      +++ I   +V+++G++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPV 250          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.181e-16
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  109 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   11 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.181e-16
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  109 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.181e-16
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  109 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.181e-16
Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   61 GSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            G  YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA D E  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  141 GLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.543e-16
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   94 SITTLIWIEVLVIGYIEFQRNSELDPEK------RLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 369
            S+  ++  +VL++G +E  R     P +      RLYPGG F DPLGLA DP+    L++ EIK+ RLAM   LGF  QA+VTG+GP+ NW  HL DP
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPF-DPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 372
            W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N   HL+DP+
Sbjct:  133 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDP---IYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 253          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  109 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
The following BLAST results are available for this feature:
BLAST of CX299938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB2_DUNSA6.925e-1744.35Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOYBN6.925e-1743.65Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB26_PETSP9.044e-1743.20Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB2D_SOLLC1.181e-1652.08Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.181e-1652.08Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.181e-1652.08Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_HORVU1.181e-1646.49Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_EUGGR1.543e-1646.94Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_PHYPA2.015e-1644.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2F_SOLLC2.015e-1651.04Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004C02SK SaltLeaf1 Citrus clementina cDNA clone C07004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299938 ID=CX299938; Name=CX299938; organism=Citrus clementina; type=EST; length=575bp
ACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGA
GTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCTCAATAA
CAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAA
AGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTT
TTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTC
AATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATTCCTTGGC
TTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACAACTGGGC
TACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACCTTCATCT
CTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACTATTGTTA
TTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTATAACATTTGAC
AGCTTAAGGGGAATGCTATGGCTTCATATTTTGAAGTCATTTCATCTTTG
CAGAAAAAAAAAAAAAAAAAAAAAA
back to top