CX299938

Overview
NameCX299938
Unique NameCX299938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299938_ssr448 microsatellite CX299938_ssr448:448..462. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4991 contig Ccv1_Contig4991:537..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  109 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA  PE  A L++ E+K+ RLAM +  GF V A+VTGKGPL N A HL+DP++
Sbjct:   93 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVN 214          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.631e-16
Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 372
            W  AG     EG   YLG P      +++ +   +V+++G IE  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 250          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.631e-16
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 372
            W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  128 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.631e-16
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 372
            W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  128 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.489e-16
Identity = 58/127 (45.67%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   25 TWQDAGKVELVEGS-SYLG-QPLPFSITTL-IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            +W  AG     EG   YLG Q L  + + L IW  +V+++G +E  R          DP   +YPGG F DPL LA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL++P++
Sbjct:  109 SWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVN 231          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.862e-16
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     +G   YLG P      +L+ I   +V+++G +E  R         +DP   LYPGG F DPLGLA  P+  A L++ EIK+ RLAM +  GF VQA+VTGKGPL + A H++DP++
Sbjct:  131 WFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSF-DPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.862e-16
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   70 YLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPL    DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:    3 YLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSF-DPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.862e-16
Identity = 56/125 (44.80%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 372
            W  AG     EG   Y G P      +++ I   +V+++G IE  R         LDP   L PGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:  131 WFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAF-DPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 251          
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   28 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 375
            W  AG     EG  S+ G P      +++ I   +V+++G +E            +DP   LY GG F DPLGL  DPE+ A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  129 WFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDP---LYLGGSF-DPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVN 250          
The following BLAST results are available for this feature:
BLAST of CX299938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB2E_SOLLC2.015e-1651.04Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_PEA2.015e-1643.65Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_TOBAC2.631e-1643.20Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_ORYSJ2.631e-1642.40Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.631e-1642.40Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN4.489e-1645.67Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_WHEAT5.862e-1642.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA5.862e-1645.87Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_PINTH5.862e-1644.80Chlorophyll a-b binding protein type I, chloroplas... [more]
CB48_MAIZE3.800e-1542.06Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07004C02SK SaltLeaf1 Citrus clementina cDNA clone C07004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299938 ID=CX299938; Name=CX299938; organism=Citrus clementina; type=EST; length=575bp
ACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGA
GTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCTCAATAA
CAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAA
AGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTT
TTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTC
AATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATTCCTTGGC
TTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACAACTGGGC
TACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACCTTCATCT
CTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACTATTGTTA
TTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTATAACATTTGAC
AGCTTAAGGGGAATGCTATGGCTTCATATTTTGAAGTCATTTCATCTTTG
CAGAAAAAAAAAAAAAAAAAAAAAA
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