CX299938
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.482e-15 Identity = 53/124 (42.74%), Postives = 70/124 (56.45%), Query Frame = 1 Query: 28 WQDAGKVELVEGS-SYLGQPLPFSITTLIW---IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 369 W AG EG YLG P ++ ++V+++G IE R LDP LYPG + FDPLGLA DP+ A L++ EIK+ RLA + GF VQA+VTGKGP+ N HL++P Sbjct: 118 WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANP 237
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14 Identity = 55/140 (39.29%), Postives = 68/140 (48.57%), Query Frame = 1 Query: 28 WQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 396 W DAGK + SS TL IE ++ Y+E +R ++ DP + Y PGG F+PL A E K E+ + RLAM+AFLGF VQ VTGKGP N HLSDP H TI+ TF Sbjct: 127 WYDAGKEQYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGG-IFNPLNFAPTQEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13 Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 1 Query: 103 TLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 387 TL +E+ ++G+ E +R + L EK L YPGG F+PLG D + L+L EIK+ RLAM+A LG+ +QA+VTG GP N HL+DP++ +L Sbjct: 154 TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVL 267
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13 Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1 Query: 184 YPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 387 YPGG FF+PLG D + L+L E+K+ RLAM+A LG+ +Q +VTG GP N H++DP++ +L Sbjct: 202 YPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVL 269
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13 Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = 1 Query: 100 TTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 396 TTL IE+++IG+ E +R +++ P +L YPGG +FDPLG + P K L+ EIK+ RLAM+A +G Q + TG GP++N HL+DP H TI F Sbjct: 151 TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12 Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 1 Query: 100 TTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 396 TTL +E+++IG+ E +R +++ P +L YPGG +FDPLG + P K L+ EIK+ RLAM+A +G Q + TG GP++N HL+DP H TI F Sbjct: 151 TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
BLAST of CX299938 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 53/139 (38.13%), Postives = 67/139 (48.20%), Query Frame = 1 Query: 28 WQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDT 393 W AGK E SS TL IE ++ Y+E +R ++ DP + Y PGG F+PL A E K EI + RLAM+AFLGF +Q VTGKGP +N H+SDP H TI+ T Sbjct: 126 WYAAGKEEYFASSS-----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG-IFNPLNFAPTLEAKEK----EIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQT 248 The following BLAST results are available for this feature:
BLAST of CX299938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299938 ID=CX299938; Name=CX299938; organism=Citrus clementina; type=EST; length=575bpback to top |