CX299941
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13 Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1 Query: 16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 309 SRFEPCGL QL+AMRYGT+PIV STGGL DTV++ Q G P+ + T++ A+ TY + +M+ GM +D SW+ A ++E+ Sbjct: 529 SRFEPCGLNQLYAMRYGTIPIVHSTGGLRDTVKDFNPYAQEGIGEGTGWTFSPLTSEKLLDTLKLAIGTYTEHKSSWEGLMRRGMGRDYSWENAAIQYEQ 628
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13 Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = 1 Query: 16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 309 SRFEPCGL QL+AM+YGTVP+V TGGL DTV E F F A P+ + + +R A++TY + +MK GM+ D +W A ++E+ Sbjct: 530 SRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTV-ENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQ 628
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13 Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = 1 Query: 16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 309 SRFEPCGL QL+AM+YGTVP+V TGGL DTV E F F A P+ + + +R A++TY + +MK GM+ D +W A ++E+ Sbjct: 530 SRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTV-ENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQ 628
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13 Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEE 309 SRFEPCGL QL+AMRYGT+P+V TGGL DTVE + G+ + P+ ++ + +R A ATY Q+ +M+ GM ++ SW+ A ++E+ Sbjct: 540 SRFEPCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLSKDSMVSALRLAAATYREYKQSWEGLMRRGMTRNYSWENAAVQYEQ 639
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_SYNS3 (Glycogen synthase OS=Synechococcus sp. (strain CC9311) GN=glgA PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13 Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 1 Query: 16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 399 SRFEPCG+ QL AMRYG VP+V GGLVDTV ++ TGF F DPVD + VR A + E+ + GM QD SW A ++++ + EV G EPG D + ++ A P Sbjct: 355 SRFEPCGISQLLAMRYGCVPVVRKVGGLVDTVPPHDPAQQSGTGFCFDRF-------DPVDF--FTALVRSWEAFRHQDSWRELQRRGMRQDYSWARSAMEYDQ--MYREVCGLKEPGPDAAAVEQFSQGQDADP 478
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_ANAD2 (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgA PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13 Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1 Query: 16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 306 SRFEPCGL Q++++RYGTVP+V + GGL DTVE+ F GF G+ E A+ T RRAL + +A +++ GMA+D SW+ A ++E Sbjct: 375 SRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVED-FDGFARGTGFRFSEYTP----QALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_POLNA (Glycogen synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=glgA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12 Identity = 44/106 (41.51%), Postives = 58/106 (54.72%), Query Frame = 1 Query: 16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 303 SRFEPCGL QL+A+RYGTVP+V GGL DTV + TGF G P AA++ + +A+A +G AL +M GMAQ+ SW A ++ Sbjct: 382 SRFEPCGLTQLYALRYGTVPVVRHVGGLADTVVGASEASVQADRATGFMFG----------PATPAALAQALLQAVAAHGQPALWHRLMLRGMAQNFSWTAAASQY 477
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_RHORT (Glycogen synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glgA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12 Identity = 48/119 (40.34%), Postives = 63/119 (52.94%), Query Frame = 1 Query: 1 FYFDSSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGID 354 F SRFEPCGL QL+A+RYGT+P+V TGGL D+V G D D A+ + RA+ Y +A L ++ + GM+QD SWK AK++ L V GS G D Sbjct: 374 FLLVPSRFEPCGLTQLYALRYGTIPVVRRTGGLADSVSHLDDGPNGTGIVFDHALPD-----ALEWAIGRAMTLYRDKATLNKVRQRGMSQDFSWKRSAKEY------LRVYGSMVGGD 481
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_RHIEC (Glycogen synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=glgA PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12 Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 1 Query: 16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 303 SRFEPCGL QL+A+RYG VPIVA TGGL DTV + + + PV + +RRA+ Y + L ++ K GM D+SW+ A+++ Sbjct: 373 SRFEPCGLTQLYALRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGMLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_ACICJ (Glycogen synthase OS=Acidiphilium cryptum (strain JF-5) GN=glgA PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12 Identity = 44/106 (41.51%), Postives = 55/106 (51.89%), Query Frame = 1 Query: 16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 303 SRFEPCGL QL A RYG +P+V+ GGLVDTV + TG Q G PV A +S +RR A Y + M +N MA D+SW PA+ + Sbjct: 374 SRFEPCGLTQLAAQRYGAIPVVSLVGGLVDTVIDANPVAISAGVATGIQFG----------PVSEAGLSDGLRRTAALYADPDKWSRMQRNAMALDVSWTEPARNY 469 The following BLAST results are available for this feature:
BLAST of CX299941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299941 ID=CX299941; Name=CX299941; organism=Citrus clementina; type=EST; length=680bpback to top |