CX299941

Overview
NameCX299941
Unique NameCX299941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1541..2220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOSL (Glycogen synthase 2 OS=Geobacter sulfurreducens GN=glgA2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 47/105 (44.76%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 306
            SRFEPCGL QL AMRYGTVP+V  TGGL DTV        EG TGF    F+ D          A    + RALA Y   ++   +M+ GM +D+SW   A ++E
Sbjct:  379 SRFEPCGLSQLIAMRYGTVPVVRHTGGLRDTVVDVTRHPREG-TGFTFEDFTAD----------ACWEAIERALAGYRDRESWRRIMRRGMHRDVSWHNAAGRYE 472          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA1_METCA (Glycogen synthase 1 OS=Methylococcus capsulatus GN=glgA1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 42/97 (43.30%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 303
            SRFEPCGL QL++ RYGTVPIV   GGL DTVE+  T  ++ +        +P   A +   V RALA Y   +    + K GMA+D SW+  A ++
Sbjct:  374 SRFEPCGLNQLYSQRYGTVPIVRKVGGLADTVEDA-TPERLAAGQASGIVFEPAKPAFLLEAVYRALALYREPEVWRAVCKCGMAKDFSWRKSASRY 469          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_ANASK (Glycogen synthase OS=Anaeromyxobacter sp. (strain K) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 41/103 (39.81%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 306
            SRFEPCGL Q++++RYGTVP+V + GGL DTVE+       TGF+   ++            A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  375 SRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVEDFDGVARGTGFRFSEYTPQ----------ALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKWEE 309
            SRFEPCGL QL+AM+YGTVP+V  TGGL DTVE  F  F          A  P+ V  +   +R A++T+     +   +MK GM +D +W   A+++E+
Sbjct:  536 SRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVET-FNPFGAKGEEGTGWAFSPLTVDKMLWALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQ 634          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_SYNSC (Glycogen synthase OS=Synechococcus sp. (strain CC9605) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 50/130 (38.46%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 399
            SRFEPCG+ QL+AMRYG+VP+V   GGLVDTV         G+ F  D    +PVD    +  VR   A     +  E+ K GM QD SW   A  ++  L+  +V G  EP  D   +   ++   A P
Sbjct:  355 SRFEPCGISQLYAMRYGSVPVVRKVGGLVDTVPPHIPAADSGTGFCFD--RFEPVDF--YTALVRAWEAFRHRDSWTELQKRGMNQDYSWDRSAVDYD--LMYKDVCGIKEPTPDAALVEQFSQGQAADP 478          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_RHILW (Glycogen synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 303
            SRFEPCGL QL+ +RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  373 SRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGMLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_RHIE6 (Glycogen synthase OS=Rhizobium etli (strain CIAT 652) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 303
            SRFEPCGL QL+ +RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  373 SRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGLLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_THISH (Glycogen synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 303
            SRFEPCGL Q++++RYGTVP+V +TGGL DTV +          +   +  D     A++  + RALA Y   A    +M+ GMAQD SW   A+ +
Sbjct:  379 SRFEPCGLNQMYSLRYGTVPVVRNTGGLADTVVDADPAHLAARDATGIQ-FDEATPQALADALARALALYHDPACWKRLMQAGMAQDFSWGRSAEAY 474          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_SYNPW (Glycogen synthase OS=Synechococcus sp. (strain WH7803) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 49/135 (36.30%), Postives = 68/135 (50.37%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 399
            SRFEPCG+ QL+AMRYG VP+V   GGLVDTV      ++  TGF    F       +PVD    +  VR   A    ++  E+ + GM QD SW   A +++   +  +V G  EP  D   +   ++   A P
Sbjct:  355 SRFEPCGISQLYAMRYGCVPVVRKVGGLVDTVPPHDPRQKSGTGFCFDRF-------EPVDF--YTALVRAWEAFRHPESWKELQRRGMEQDYSWARSALEYDR--MYRDVCGLKEPSPDAAAVEQFSQGQEADP 478          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 45/103 (43.69%), Postives = 54/103 (52.43%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLL 318
            SRFEPCGL QL+AM YGTVP+V + GGL DTVE    +    +G      EA   +D         R   T    +   + K GM QDLSW   AK +EE LL
Sbjct:  645 SRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRLIDALGHCLNTYRNYRT----SWEGLQKRGMMQDLSWDNAAKLYEEVLL 743          
The following BLAST results are available for this feature:
BLAST of CX299941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GLGA2_GEOSL1.893e-1244.76Glycogen synthase 2 OS=Geobacter sulfurreducens GN... [more]
GLGA1_METCA2.472e-1243.30Glycogen synthase 1 OS=Methylococcus capsulatus GN... [more]
GLGA_ANASK4.217e-1239.81Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
SSY1_WHEAT5.508e-1242.00Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
GLGA_SYNSC5.508e-1238.46Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_RHILW5.508e-1240.21Glycogen synthase OS=Rhizobium leguminosarum bv. t... [more]
GLGA_RHIE65.508e-1240.21Glycogen synthase OS=Rhizobium etli (strain CIAT 6... [more]
GLGA_THISH9.395e-1241.24Glycogen synthase OS=Thioalkalivibrio sp. (strain ... [more]
GLGA_SYNPW9.395e-1236.30Glycogen synthase OS=Synechococcus sp. (strain WH7... [more]
SSY21_ORYSJ1.227e-1143.69Soluble starch synthase 2-1, chloroplastic/amylopl... [more]

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Properties
Property NameValue
Genbank descriptionC07004C05SK SaltLeaf1 Citrus clementina cDNA clone C07004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299941 ID=CX299941; Name=CX299941; organism=Citrus clementina; type=EST; length=680bp
TTTTATTTTGATTCCAGCAGATTTGAACCTTGTGGTCTCATTCAATTACA
TGCCATGCGTTATGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGG
TTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGT
GTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCTGCAGTGTCCACAAC
CGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGCTTTGGCTGAAATGA
TGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAGGACCAGCTAAGAAA
TGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGTAGTGAACCTGGAAT
TGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAATGTGGCCACTCCTT
GATCGAGGCTACAAAAATCTCCACTTTTATTTTGGACCGCAAACATGTTC
CTGTAATTCTCCACAACCCAAGATATTACTTAGGAAATAACATAGGTTGG
CAGTATATGCAGCATGCGCTATTTTCAATAATGGTTTGGAGTTGAGACAT
TAGTGTTTACCTTGTATAATGAAATATTAAGTTCTGTTTTACAGTTTTGT
AAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAATGAAAAAGTTCAAC
TGAACAAGTTTATAAAAAAAAAAAAAAAAA
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