CX299941

Overview
NameCX299941
Unique NameCX299941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1541..2220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_RHIL3 (Glycogen synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 303
            SRFEPCGL QL+ +RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  373 SRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQFA-PVTETGMLQAIRRAMHFYQDRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_ANADF (Glycogen synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 306
            SRFEPCGL Q++++RYGT+P+V + GGL DTVE+ F G+  G+         P    A+   VRRAL  +   +A   MM  GMA D SW   A+ +E
Sbjct:  374 SRFEPCGLNQMYSLRYGTIPVVRAVGGLEDTVED-FDGWSRGT-GFKFRDYHP---QAMLLAVRRALEAHRDRRAWRAMMLRGMALDFSWDRSAQAYE 466          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA2_NITOC (Glycogen synthase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 44/106 (41.51%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 303
            SRFEPCGL QL+A+RYGTVPI   TGGL DT+         +E  TGF     S           +A+ T ++RALA Y  ++    +   GMAQ+ SW+  AK +
Sbjct:  377 SRFEPCGLTQLYALRYGTVPIARRTGGLSDTIVDATEKNLRQELATGFTFTESS----------PSALLTAIQRALACYAQSRQWRRLALTGMAQNFSWQTSAKAY 472          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA1_RHIRD (Glycogen synthase 1 OS=Rhizobium radiobacter GN=glgA1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPA 294
            SRFEPCGL QL+A+RYG +P+VA TGGL DTV +      + S +       PV +  +   +RR +  Y    L  +M K GM  D+SW+  A
Sbjct:  373 SRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDA-NHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSA 465          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA1_AGRT5 (Glycogen synthase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPA 294
            SRFEPCGL QL+A+RYG +P+VA TGGL DTV +      + S +       PV +  +   +RR +  Y    L  +M K GM  D+SW+  A
Sbjct:  373 SRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDA-NHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSA 465          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_SYNPX (Glycogen synthase OS=Synechococcus sp. (strain WH8102) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 50/135 (37.04%), Postives = 67/135 (49.63%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 399
            SRFEPCG+ QL+AMRYG+VP+V   GGLVDTV      +   TGF    F       +PVD    +  VR   A     +  E+ K GM QD SW   A  ++  ++  +V G  EP  D   +   ++   A P
Sbjct:  355 SRFEPCGISQLYAMRYGSVPVVRKVGGLVDTVPPHSPADASGTGFCFDRF-------EPVDF--YTALVRAWEAYRHRDSWQELQKRGMQQDYSWDRSAIDYD--VMYRDVCGLKEPTPDAAMVEQFSQGQAADP 478          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_GEOSF (Glycogen synthase OS=Geobacter sp. (strain FRC-32) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 309
            SR+EPCGL Q+ A+RYG VP+V  TGGL DT+ +E     +   FS      D     A+   + RA+  Y  +A   +MMK GMA D SW   A K+EE
Sbjct:  379 SRYEPCGLGQMIALRYGAVPVVRKTGGLADTIFDERDQPKEPNGFS-----FDEYTPEALWEALSRAVEAYSDKAAWKKMMKRGMAGDFSWNTSALKYEE 473          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_ELUMP (Glycogen synthase OS=Elusimicrobium minutum (strain Pei191) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 309
            SRFEPCGL Q+ +MRYGTVPIV+  GGL+DTV+  +G T +  G F ++           +  ++  AL  Y   +    ++KNGM +D SW   A+++++
Sbjct:  380 SRFEPCGLSQMISMRYGTVPIVSRVGGLLDTVKGYDGITKYATGFFILE------FSETGIERSLDYALKYYQDKRCWGMLIKNGMEKDFSWTKSAQEYQD 474          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA2_BRAJA (Glycogen synthase 2 OS=Bradyrhizobium japonicum GN=glgA2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEG--FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA-LATYGTQALAEMMKNGMAQDLSWKGPA 294
            SRFEPCGL QL A+RYG VPIV+  GGL DT+    E G   TGF+ G          PV   A++ T+R+A  A +      ++ +NG+A D+SW+  A
Sbjct:  377 SRFEPCGLTQLCALRYGAVPIVSRVGGLEDTIVDIGEAGREATGFKFG----------PVTADALAGTLRKANTAFHDKLTWRQLQRNGLATDVSWRSRA 466          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPS (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 43/103 (41.75%), Postives = 54/103 (52.43%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 303
            SRFEPCGL QL A+RYG VP+VA  GGL DTV +       TG   G  FS       PV    ++  + +  A Y   A    +  NGM  D+SWK PA+ +
Sbjct:  377 SRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-------PVTADMLTAALTKTRALYADHATWRNLQINGMTTDVSWKNPAQHY 472          
The following BLAST results are available for this feature:
BLAST of CX299941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GLGA_RHIL31.227e-1140.21Glycogen synthase OS=Rhizobium leguminosarum bv. v... [more]
GLGA_ANADF1.227e-1143.88Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA2_NITOC1.227e-1141.51Glycogen synthase 2 OS=Nitrosococcus oceani (strai... [more]
GLGA1_RHIRD1.227e-1141.49Glycogen synthase 1 OS=Rhizobium radiobacter GN=gl... [more]
GLGA1_AGRT51.227e-1141.49Glycogen synthase 1 OS=Agrobacterium tumefaciens (... [more]
GLGA_SYNPX1.603e-1137.04Glycogen synthase OS=Synechococcus sp. (strain WH8... [more]
GLGA_GEOSF1.603e-1143.00Glycogen synthase OS=Geobacter sp. (strain FRC-32)... [more]
GLGA_ELUMP2.093e-1138.61Glycogen synthase OS=Elusimicrobium minutum (strai... [more]
GLGA2_BRAJA2.734e-1143.00Glycogen synthase 2 OS=Bradyrhizobium japonicum GN... [more]
GLGA_RHOPS3.570e-1141.75Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]

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Properties
Property NameValue
Genbank descriptionC07004C05SK SaltLeaf1 Citrus clementina cDNA clone C07004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299941 ID=CX299941; Name=CX299941; organism=Citrus clementina; type=EST; length=680bp
TTTTATTTTGATTCCAGCAGATTTGAACCTTGTGGTCTCATTCAATTACA
TGCCATGCGTTATGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGG
TTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGT
GTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCTGCAGTGTCCACAAC
CGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGCTTTGGCTGAAATGA
TGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAGGACCAGCTAAGAAA
TGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGTAGTGAACCTGGAAT
TGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAATGTGGCCACTCCTT
GATCGAGGCTACAAAAATCTCCACTTTTATTTTGGACCGCAAACATGTTC
CTGTAATTCTCCACAACCCAAGATATTACTTAGGAAATAACATAGGTTGG
CAGTATATGCAGCATGCGCTATTTTCAATAATGGTTTGGAGTTGAGACAT
TAGTGTTTACCTTGTATAATGAAATATTAAGTTCTGTTTTACAGTTTTGT
AAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAATGAAAAAGTTCAAC
TGAACAAGTTTATAAAAAAAAAAAAAAAAA
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