CX299941

Overview
NameCX299941
Unique NameCX299941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1541..2220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: SSG2_PEA (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLL 318
            SRFEPCGL QL+AM YGTVP+V   GGL DTV+  F  F            D  +   +   +   L TY    ++   + + GM+QDLSW   A+++EE L+
Sbjct:  648 SRFEPCGLNQLYAMSYGTVPVVHGVGGLRDTVQP-FNPFDESGVG---WTFDRAEANKLMAALWNCLLTYKDYKKSWEGIQERGMSQDLSWDNAAQQYEEVLV 746          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPB (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSWKGPAKKWEETLLNLEVA 333
            SRFEPCGL QL A+RYG VP+VA  GGL DTV +      + +         PV    ++  + +  A Y  +A  + ++ NGM  D+SW+ PA+ + +   +L  A
Sbjct:  377 SRFEPCGLTQLCALRYGAVPVVARVGGLSDTVVDA-NEMAIAAGVATGVQFSPVTGDMLAAALSKTRALYADRAAWQALQHNGMTADVSWRNPAQHYAQLYRSLLAA 482          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_PROMA (Glycogen synthase OS=Prochlorococcus marinus GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 50/135 (37.04%), Postives = 68/135 (50.37%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 399
            SRFEPCG+ QL AMRYG++PIV + GGLVDTV       +  TGF    F       +P+D    +  VR   A    ++  E+ K  M Q  SW+  A ++E   +  EV+G  EP  D  E+   +    A P
Sbjct:  355 SRFEPCGISQLLAMRYGSIPIVRNVGGLVDTVIPHDPINKSGTGFCFDRF-------EPIDF--YTALVRSWEAFRHRRSWKELQKRAMTQMYSWERSAMEYE--TMYKEVSGYKEPSPDAIEVEKFSVGQDADP 478          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_FERNB (Glycogen synthase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWKGPAKKW 303
            SR+EPCGL Q++++RYGT+PIV  TGGL DTV+E     + G+     E  DP   A +   + RA+  Y + +    ++KN M  DLSW   AK++
Sbjct:  380 SRYEPCGLGQMYSLRYGTIPIVRYTGGLADTVKEYNPETKEGN-GFGFEGFDP---AHLLKAMARAIYFYNSKEDWNTLIKNAMTMDLSWDKSAKEY 472          
BLAST of CX299941 vs. ExPASy Swiss-Prot
Match: GLGA_DEIDV (Glycogen synthase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   16 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKW 303
            SRFEPCGL Q+ AMRYGT+P+V  TGGLVDTV     GF+            P    A+    ++A A +  Q+  E  +   MA D SW GPA+++
Sbjct:  351 SRFEPCGLSQMIAMRYGTLPVVRETGGLVDTVPPD-VGFRF----------QPATPEALVEACQQARAAFEDQSDWEARVARAMALDFSWDGPAREY 436          
The following BLAST results are available for this feature:
BLAST of CX299941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SSG2_PEA6.090e-1139.81Granule-bound starch synthase 2, chloroplastic/amy... [more]
GLGA_RHOPB7.954e-1136.45Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_PROMA7.954e-1137.04Glycogen synthase OS=Prochlorococcus marinus GN=gl... [more]
GLGA_FERNB7.954e-1141.24Glycogen synthase OS=Fervidobacterium nodosum (str... [more]
GLGA_DEIDV7.954e-1142.27Glycogen synthase OS=Deinococcus deserti (strain V... [more]

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Properties
Property NameValue
Genbank descriptionC07004C05SK SaltLeaf1 Citrus clementina cDNA clone C07004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299941 ID=CX299941; Name=CX299941; organism=Citrus clementina; type=EST; length=680bp
TTTTATTTTGATTCCAGCAGATTTGAACCTTGTGGTCTCATTCAATTACA
TGCCATGCGTTATGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGG
TTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGT
GTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGCTGCAGTGTCCACAAC
CGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAGCTTTGGCTGAAATGA
TGAAAAATGGCATGGCTCAAGATCTTTCATGGAAAGGACCAGCTAAGAAA
TGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGTAGTGAACCTGGAAT
TGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAATGTGGCCACTCCTT
GATCGAGGCTACAAAAATCTCCACTTTTATTTTGGACCGCAAACATGTTC
CTGTAATTCTCCACAACCCAAGATATTACTTAGGAAATAACATAGGTTGG
CAGTATATGCAGCATGCGCTATTTTCAATAATGGTTTGGAGTTGAGACAT
TAGTGTTTACCTTGTATAATGAAATATTAAGTTCTGTTTTACAGTTTTGT
AAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAATGAAAAAGTTCAAC
TGAACAAGTTTATAAAAAAAAAAAAAAAAA
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