CX299943

Overview
NameCX299943
Unique NameCX299943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig819 contig Ccv1_Contig819:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_YERPP (Glycine cleavage system H protein OS=Yersinia pestis (strain Pestoides F) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 67/127 (52.76%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 507
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VNT+L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_YERPN (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 67/127 (52.76%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 507
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VNT+L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_YERPG (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 67/127 (52.76%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 507
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VNT+L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_YERPE (Glycine cleavage system H protein OS=Yersinia pestis GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 67/127 (52.76%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 507
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VNT+L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_YERPB (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 67/127 (52.76%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 507
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VNT+L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_YERPA (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 67/127 (52.76%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 507
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VNT+L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_YERP3 (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 67/127 (52.76%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 507
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VNT+L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_ALCBS (Glycine cleavage system H protein OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            L+YASSHEW K E  VATVGI+DHAQD +G++V+VELPE G  V  G   GVVESVKA SD+ SP+SGE++E+N  L + P LVN+ PYE GWL KV+ +   +L+SL+    Y    + E
Sbjct:    8 LRYASSHEWAKVEDGVATVGISDHAQDAMGDLVYVELPEVGQVVAAGDETGVVESVKAASDIYSPVSGEIVEINEALEDEPELVNNVPYEGGWLFKVQLTDEGELDSLLTADQYQAQIDSE 128          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_VIBPA (Glycine cleavage system H protein OS=Vibrio parahaemolyticus GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            LK+  SHEWV+  G    T+GI++HAQ+ LG+VVFV+LP+    V+ G  F +VESVKA SD+ SP++GEV+E+N +L ++P L+N  PYE GW++KVK S PS+L+ L D + Y    EEE
Sbjct:    5 LKFTDSHEWVRDNGDGTVTIGISEHAQEMLGDVVFVDLPDVEDEVEAGESFSLVESVKAASDIYSPVTGEVVEINEELEDSPELINEEPYEGGWIVKVKLSDPSELDDLKDAEEYLSSIEEE 126          
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_VIBSL (Glycine cleavage system H protein OS=Vibrio splendidus (strain LGP32) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 62/122 (50.82%), Postives = 88/122 (72.13%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            LK+A SHEWVK  G    T+GI++HAQ+ LG+VVFV+LP+T   ++ G  F +VESVKA SD+ +PISGE++E+N +L ++P L+N  PYE GW++KVK S  S+L +L D + Y    EE+
Sbjct:    5 LKFADSHEWVKDNGDGTVTIGISEHAQELLGDVVFVDLPDTEDEIEAGESFSLVESVKAASDIYAPISGEIVEINEELEDSPELINEEPYEGGWIVKVKMSDASELNNLKDAEEYLSSVEED 126          
The following BLAST results are available for this feature:
BLAST of CX299943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_YERPP8.764e-3252.76Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPN8.764e-3252.76Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPG8.764e-3252.76Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPE8.764e-3252.76Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPB8.764e-3252.76Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_YERPA8.764e-3252.76Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERP38.764e-3252.76Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_ALCBS8.764e-3254.55Glycine cleavage system H protein OS=Alcanivorax b... [more]
GCSH_VIBPA1.495e-3150.82Glycine cleavage system H protein OS=Vibrio paraha... [more]
GCSH_VIBSL1.952e-3150.82Glycine cleavage system H protein OS=Vibrio splend... [more]

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Properties
Property NameValue
Genbank descriptionC07004C07SK SaltLeaf1 Citrus clementina cDNA clone C07004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299943 ID=CX299943; Name=CX299943; organism=Citrus clementina; type=EST; length=610bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGTTGGCATCACTGATCATGCCCAGGATCATCTTGGAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCAGTCAAACAAGGCGGCGGCTTCGGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAACACCAAGCTCACTGAAACGCCTGGCTTGGTCA
ATTCAAGCCCATATGAAGAAGGATGGCTGATAAAGGTGAAGCCTAGCAGC
CCTTCGGATTTAGAATCCTTGATGGATCCACAGGCTTACACGAAATTTTG
CGAAGAAGAAAATGCAGCTCATTAGAATCTTCACATTGTTTCATTTTCTT
TTCCCAAAACATACTAATAAATCTCTTTGTTTTACTCGCTAAAAAAAAAA
AAAAAAAAAA
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