CX299943

Overview
NameCX299943
Unique NameCX299943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig819 contig Ccv1_Contig819:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH3_SULTO (Probable glycine cleavage system H protein 3 OS=Sulfolobus tokodaii GN=gcvH3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 32/96 (33.33%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:  154 YASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVK 441
            Y   H WVK EG + TVGIT   Q   G++  V     G  V        +ES K       P+ GE++++N ++ + P L+N  PY + W++K+K
Sbjct:   15 YPEEHVWVKIEGDMVTVGITSLGQYMAGKIFQVTTKNKGEKVTPKSVIFTLESAKWIGKFRLPVEGEIVDINDEVVKNPTLINEKPY-DAWIVKIK 109
The following BLAST results are available for this feature:
BLAST of CX299943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH3_SULTO5.000e-1133.33Probable glycine cleavage system H protein 3 OS=Su... [more]

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Properties
Property NameValue
Genbank descriptionC07004C07SK SaltLeaf1 Citrus clementina cDNA clone C07004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299943 ID=CX299943; Name=CX299943; organism=Citrus clementina; type=EST; length=610bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGTTGGCATCACTGATCATGCCCAGGATCATCTTGGAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCAGTCAAACAAGGCGGCGGCTTCGGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAACACCAAGCTCACTGAAACGCCTGGCTTGGTCA
ATTCAAGCCCATATGAAGAAGGATGGCTGATAAAGGTGAAGCCTAGCAGC
CCTTCGGATTTAGAATCCTTGATGGATCCACAGGCTTACACGAAATTTTG
CGAAGAAGAAAATGCAGCTCATTAGAATCTTCACATTGTTTCATTTTCTT
TTCCCAAAACATACTAATAAATCTCTTTGTTTTACTCGCTAAAAAAAAAA
AAAAAAAAAA
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