CX299943 | Citrus Genome Database

Overview


Name	CX299943
Unique Name	CX299943
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	610

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig819	contig	Ccv1_Contig819:1..610.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_SALPA (Glycine cleavage system H protein OS=Salmonella paratyphi A GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 1

Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_SALNS (Glycine cleavage system H protein OS=Salmonella newport (strain SL254) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 1

Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_SALHS (Glycine cleavage system H protein OS=Salmonella heidelberg (strain SL476) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 1

Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_SALG2 (Glycine cleavage system H protein OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 1

Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCSVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_SALEP (Glycine cleavage system H protein OS=Salmonella enteritidis PT4 (strain P125109) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 1

Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_SALDC (Glycine cleavage system H protein OS=Salmonella dublin (strain CT_02021853) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 1

Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_SALCH (Glycine cleavage system H protein OS=Salmonella choleraesuis GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 1

Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYTGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_SALA4 (Glycine cleavage system H protein OS=Salmonella agona (strain SL483) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 1

Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

[Close]

BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_HALOH (Glycine cleavage system H protein OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 62/125 (49.60%), Postives = 82/125 (65.60%), Query Frame = 1

Query:  133 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 507
            +V + L Y  +HEW+K +G  A VG+TD+AQ  LG++VFVELPE      Q  GF V+ESVKA SDV  P+ GEV+E N +L E P LVN  PY  GWL+K+K +   +LE LM  + Y ++ EE
Sbjct:    2 NVPENLMYTKNHEWIKVDGDTALVGVTDYAQKELGDIVFVELPEVSDEFAQSEGFAVLESVKAVSDVYLPVGGEVLEANEELLENPELVNQEPYASGWLVKIKLADKKELEDLMSSEEYARYLEE 126

[Close]

BLAST of CX299943 vs. ExPASy Swiss-Prot
Match: GCSH_ESCF3 (Glycine cleavage system H protein OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 1

Query:  130 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 510
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129

The following BLAST results are available for this feature:

BLAST of CX299943 vs. ExPASy Swiss-Prot

BLAST of CX299943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461


Match Name	E-value	Identity	Description
GCSH_SALPA	1.952e-31	51.56	Glycine cleavage system H protein OS=Salmonella pa...	[more]
GCSH_SALNS	1.952e-31	51.56	Glycine cleavage system H protein OS=Salmonella ne...	[more]
GCSH_SALHS	1.952e-31	51.56	Glycine cleavage system H protein OS=Salmonella he...	[more]
GCSH_SALG2	1.952e-31	51.56	Glycine cleavage system H protein OS=Salmonella ga...	[more]
GCSH_SALEP	1.952e-31	51.56	Glycine cleavage system H protein OS=Salmonella en...	[more]
GCSH_SALDC	1.952e-31	51.56	Glycine cleavage system H protein OS=Salmonella du...	[more]
GCSH_SALCH	1.952e-31	51.56	Glycine cleavage system H protein OS=Salmonella ch...	[more]
GCSH_SALA4	1.952e-31	51.56	Glycine cleavage system H protein OS=Salmonella ag...	[more]
GCSH_HALOH	1.952e-31	49.60	Glycine cleavage system H protein OS=Halothermothr...	[more]
GCSH_ESCF3	1.952e-31	51.56	Glycine cleavage system H protein OS=Escherichia f...	[more]

Pages

Properties


Property Name	Value
Genbank description	C07004C07SK SaltLeaf1 Citrus clementina cDNA clone C07004C07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX299943 ID=CX299943; Name=CX299943; organism=Citrus clementina; type=EST; length=610bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGTTGGCATCACTGATCATGCCCAGGATCATCTTGGAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCAGTCAAACAAGGCGGCGGCTTCGGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAACACCAAGCTCACTGAAACGCCTGGCTTGGTCA
ATTCAAGCCCATATGAAGAAGGATGGCTGATAAAGGTGAAGCCTAGCAGC
CCTTCGGATTTAGAATCCTTGATGGATCCACAGGCTTACACGAAATTTTG
CGAAGAAGAAAATGCAGCTCATTAGAATCTTCACATTGTTTCATTTTCTT
TTCCCAAAACATACTAATAAATCTCTTTGTTTTACTCGCTAAAAAAAAAA
AAAAAAAAAA