CX299945

Overview
NameCX299945
Unique NameCX299945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299945 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.979e-48
Identity = 93/128 (72.66%), Postives = 105/128 (82.03%), Query Frame = 2
Query:    2 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 385
            REDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+AN DAI +G+F+
Sbjct:  313 REDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of CX299945 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.375e-48
Identity = 92/127 (72.44%), Postives = 105/127 (82.68%), Query Frame = 2
Query:    2 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 382
            REDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +GNF
Sbjct:  313 REDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of CX299945 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.283e-47
Identity = 93/128 (72.66%), Postives = 106/128 (82.81%), Query Frame = 2
Query:    2 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 385
            REDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG ANEDAI+SG+F+
Sbjct:  313 REDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of CX299945 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.188e-47
Identity = 90/125 (72.00%), Postives = 105/125 (84.00%), Query Frame = 2
Query:    2 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSG 376
            REDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVRKW          + L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +G
Sbjct:  308 REDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of CX299945 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.088e-38
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 2
Query:    2 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 313
            REDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW          ++LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  306 REDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
BLAST of CX299945 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.971e-28
Identity = 65/114 (57.02%), Postives = 78/114 (68.42%), Query Frame = 2
Query:    2 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAL 343
            REDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR+W          + LVN+++      +  M +  L++YG  +V EQENVKRVQLAD YLS A L
Sbjct:  282 REDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV-AMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394          
BLAST of CX299945 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 44/108 (40.74%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    2 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 325
            R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R +            +VNS E  P F++P  T+  L+E  N +V EQ+ ++  QL D+Y
Sbjct:  182 RDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289          
BLAST of CX299945 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.079e-20
Identity = 46/108 (42.59%), Postives = 70/108 (64.81%), Query Frame = 2
Query:    2 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 325
            R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R +            +VNS EA P F++P  ++  L+E GN+++ EQ+ V   QL D+Y
Sbjct:  182 RDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289          
The following BLAST results are available for this feature:
BLAST of CX299945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_TOBAC1.979e-4872.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC3.375e-4872.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.283e-4772.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN2.188e-4772.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.088e-3874.04Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE2.971e-2857.02Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC3.889e-2040.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP5.079e-2042.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC07004C09SK SaltLeaf1 Citrus clementina cDNA clone C07004C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299945 ID=CX299945; Name=CX299945; organism=Citrus clementina; type=EST; length=651bp
AAGGGAGGACCGTATTGGTGTGTGCAAGGGTATCTTCAGGAATGACAATG
TGGCTGATGACGACATTGTCAAGCTTGTCGACACCTTCCCCGGCCAATCC
ATTGATTTCTTTGGAGCCCTGAGGGCCAGAGTCTATGATGATGAGGTGAG
GAAGTGGATCTCTGGTGTTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGA
ACTCAAAGGAAGCAGCCCCAACATTCGAGCAACCAAGGATGACAATGGAG
AAGCTGCTCGAGTACGGAAACATGATTGTGCAAGAGCAAGAGAATGTGAA
GAGAGTTCAGTTGGCTGACAAGTATTTGAGTGAGGCCGCTCTTGGTGAAG
CTAATGAAGATGCTATTCAGAGTGGAAATTTCTATGGCAAAGCAGCCCAG
CAAATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTACTGCAGAAAA
CTTTGATCCAACTGCAAGAAGTGATGATGGAAGCTGCCAATACACGCTTT
AGGCCTTGTTTGTAAGGGTTGAGAAGTGTCGCACTTTGCTTAGGATGTGA
GATATTCAAATAATATTGTTGCATTTTCATTTCTTTGTTAATTAGAAAGA
ATCCTCTAATTTTGTGTTATATCACAACTCTTTATTCGATCTTTAAAAGG
T
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