CX299946

Overview
NameCX299946
Unique NameCX299946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9586 contig Ccv1_Contig9586:128..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_XENTR (60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.956e-26
Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   96 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 371
            VGLNKGH VTK    PR   R+G+ +K   FV+++IREV GFAPYERR  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMRKA 100          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_XENLA (60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.956e-26
Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   96 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 371
            VGLNKGH VTK    PR   R+G+ +K   FV+++IREV GFAPYERR  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMRKA 100          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_DANRE (60S ribosomal protein L36 OS=Danio rerio GN=rpl36 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.956e-26
Identity = 58/97 (59.79%), Postives = 71/97 (73.20%), Query Frame = 3
Query:   96 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEK 386
            VGLNKGH VTK    P+ S R+G+ +K   F ++LIREV GFAPYERR  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A   ++
Sbjct:    9 VGLNKGHKVTKNVSKPKHSRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNTLAAMRKAAAKKE 105          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_LAPHA (60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.779e-26
Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   96 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 371
            VGLNKGH VTK    PR   R+G+ +K   FV+++IREV GFAPYERR  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A
Sbjct:    9 VGLNKGHKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_RAT (60S ribosomal protein L36 OS=Rattus norvegicus GN=Rpl36 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.016e-25
Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   96 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 371
            VGLNKGH VTK    PR S R+G+ +K   FV+++IREV  FAPYERR  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36B_SCHPO (60S ribosomal protein L36-B OS=Schizosaccharomyces pombe GN=rpl36b PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.733e-25
Identity = 56/95 (58.95%), Postives = 75/95 (78.95%), Query Frame = 3
Query:   87 GLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 371
            GL VGLNKG  +TK++LP RPS RKG  SKR  FV++++REVAGFAPYERR+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++  R A
Sbjct:    4 GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_CHICK (60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.860e-25
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   96 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 371
            VGLNKG+ VTK    PR   R+G+ +K   FV+++IREV GFAPYERR  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A
Sbjct:    9 VGLNKGYKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_ICTPU (60S ribosomal protein L36 OS=Ictalurus punctatus GN=rpl36 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.600e-25
Identity = 57/97 (58.76%), Postives = 70/97 (72.16%), Query Frame = 3
Query:   96 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEK 386
            VGL KGH VTK    P+ S R G+ +K   FV+++IREV GFAPYERR  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A   ++
Sbjct:    9 VGLKKGHPVTKNVTKPKHSRRGGRLTKHSKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNILAAMRKAAAKKE 105          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_MOUSE (60S ribosomal protein L36 OS=Mus musculus GN=Rpl36 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.281e-24
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 3
Query:   96 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 371
            VGLNKGH VTK    PR S R+ + +    FV+++IREV GFAPYERR  ELLKV K KRALK  K+++GTH RAK+KREE+SN L  M  A
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKRALKFIKKRVGTHIRAKRKREELSNVLAAMEEA 100          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_CAEEL (60S ribosomal protein L36 OS=Caenorhabditis elegans GN=rpl-36 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 9.509e-24
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   87 GLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 371
            GL VGLNKGH  T+  +  R +  KG  SK+   V+ L+RE+ GFAPYERR+ E+L++ KDKRALK  KR++GTH+RAK KREE+ N +   R A
Sbjct:    8 GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRKA 102          
The following BLAST results are available for this feature:
BLAST of CX299946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL36_XENTR5.956e-2663.0460S ribosomal protein L36 OS=Xenopus tropicalis GN... [more]
RL36_XENLA5.956e-2663.0460S ribosomal protein L36 OS=Xenopus laevis GN=rpl... [more]
RL36_DANRE5.956e-2659.7960S ribosomal protein L36 OS=Danio rerio GN=rpl36 ... [more]
RL36_LAPHA7.779e-2663.0460S ribosomal protein L36 OS=Lapemis hardwickii GN... [more]
RL36_RAT1.016e-2563.0460S ribosomal protein L36 OS=Rattus norvegicus GN=... [more]
RL36B_SCHPO1.733e-2558.9560S ribosomal protein L36-B OS=Schizosaccharomyces... [more]
RL36_CHICK3.860e-2561.9660S ribosomal protein L36 OS=Gallus gallus GN=RPL3... [more]
RL36_ICTPU8.600e-2558.7660S ribosomal protein L36 OS=Ictalurus punctatus G... [more]
RL36_MOUSE7.281e-2459.7860S ribosomal protein L36 OS=Mus musculus GN=Rpl36... [more]
RL36_CAEEL9.509e-2453.6860S ribosomal protein L36 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionC07004C10SK SaltLeaf1 Citrus clementina cDNA clone C07004C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299946 ID=CX299946; Name=CX299946; organism=Citrus clementina; type=EST; length=639bp
GGGTCTTTCTGAAGAATTTTCTGTACTCTGATGTGTATTGTGGGTGTTGG
TAATTACAGGTGATGGCTCCAAAGCAGCCAAATACTGGCCTTTTTGTGGG
TCTAAACAAAGGACATGTCGTGACCAAGAAGGAGTTGCCTCCCCGCCCTT
CTGATAGAAAAGGCAAAACTAGTAAGAGAGTCCATTTTGTGAAGAACCTC
ATTAGGGAGGTTGCTGGTTTTGCTCCCTATGAAAGGAGGATTACTGAACT
TCTTAAAGTTGGGAAAGATAAGCGTGCTTTGAAGGTGGCAAAGAGAAAGT
TGGGCACTCACAAGAGAGCCAAGAAGAAGCGCGAGGAAATGTCCAATGCT
CTACGCAAGATGAGGTCGGCTGGAGGTGCAGAGAAGAAGAAGTGAAGCCT
CATTCAAGGTTTCTTTTAGATTCATCAGTGAAAGAATTTTATTTAGCTTT
TGTTCTTCTAATATTGGAATTTTGGTTAGAGTTTTAGACTTGCTTTGAAA
TGTTAACTGTACTTTGTTTCCAATGAGAGAGTTCAGTTTTGTTTCCTTTG
TCTGTGAAATTTGAGTATCTTGTTACTCACAGTTGCCAGTTTTTTAATCA
TCGATAAGAATTGATTATCCAAAAAAAAAAAAAAAAAAA
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