CX299946

Overview
NameCX299946
Unique NameCX299946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9586 contig Ccv1_Contig9586:128..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_TRIHM (60S ribosomal protein L36 OS=Trichoderma hamatum GN=rpl36 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.793e-22
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 3
Query:   63 MAPKQP-NTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 371
            MA + P  TGL VGLNKGH  T + + PR S  KG  SKR  FV+ +++EVAG APYERR+ ELL+  KDKRA K+AK++LGT  RAK+K +E+   + + R A
Sbjct:    1 MAKEAPAKTGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRARKLAKKRLGTFGRAKRKVDELQRVIAESRRA 104          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_CANAL (60S ribosomal protein L36 OS=Candida albicans GN=RPL36 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.840e-21
Identity = 47/94 (50.00%), Postives = 70/94 (74.47%), Query Frame = 3
Query:   84 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMR 365
            +G+  G+NKG   T KE+ P+ S RKG +S+R  FV+++++EVAG APYERR+ EL++   +KRA K+AK++LGTHKRA +K EEM+  + + R
Sbjct:    4 SGIAAGVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNAGEKRAKKLAKKRLGTHKRALRKVEEMTQVIAESR 97          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_DROME (60S ribosomal protein L36 OS=Drosophila melanogaster GN=RpL36 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.088e-19
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 3
Query:   90 LFVGLNKGHVVTKKELPPRPSDRKGK----------TSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 371
            L +GLNKGH  +K        D+K K           ++   F+++L+REV G APYE+R  ELLKV KDKRALK  KR+LGTH RAK+KREE+SN L ++R A
Sbjct:    7 LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKA 110          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36X_HUMAN (Putative 60S ribosomal protein L36-like 1 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.134e-19
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 3
Query:   90 LFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 353
            + VGLNKGH +TK    PR S   G+ +K    V+ +I+EV GF PYER   ELLKV KDK+ALK  K+++GTH   K+KREE+SN L
Sbjct:    7 MVVGLNKGHKLTKNLSKPRHSRSLGRPTKHTKCVRGMIQEVCGFTPYERCTMELLKVSKDKQALKFIKKRVGTHIHTKRKREELSNVL 94          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36B_YEAST (60S ribosomal protein L36-B OS=Saccharomyces cerevisiae GN=RPL36B PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 3
Query:   84 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMR 365
            TG+ +GLNKG  VT+    P+ S +KG  S R  FV++L+RE+AG +PYERR+ +L++   +KRA KVAK++LG+  RAK K EEM+N +   R
Sbjct:    5 TGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 98          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36A_YEAST (60S ribosomal protein L36-A OS=Saccharomyces cerevisiae GN=RPL36A PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 7.052e-19
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 3
Query:   84 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMR 365
            TG+ +GLNKG  VT     P+ S +KG  S R  FV++L+RE+AG +PYERR+ +L++   +KRA KVAK++LG+  RAK K EEM+N +   R
Sbjct:    5 TGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 98          
BLAST of CX299946 vs. ExPASy Swiss-Prot
Match: RL36_DICDI (60S ribosomal protein L36 OS=Dictyostelium discoideum GN=rpl36 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.571e-18
Identity = 45/92 (48.91%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   84 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRK 359
            +G+  G NKGH V K+ +    + +K   +KRV  ++++IRE++GF+PYERR++ELLK G DKRALKVAK++LG+ +  KKKR++++N  RK
Sbjct:   12 SGIIKGFNKGHAVAKRTVTS--TFKKQVVTKRVAAIRDVIREISGFSPYERRVSELLKSGLDKRALKVAKKRLGSIQAGKKKRDDIANINRK 101          
The following BLAST results are available for this feature:
BLAST of CX299946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL36_TRIHM1.793e-2252.8860S ribosomal protein L36 OS=Trichoderma hamatum G... [more]
RL36_CANAL9.840e-2150.0060S ribosomal protein L36 OS=Candida albicans GN=R... [more]
RL36_DROME1.088e-1950.0060S ribosomal protein L36 OS=Drosophila melanogast... [more]
RL36X_HUMAN4.134e-1953.41Putative 60S ribosomal protein L36-like 1 OS=Homo ... [more]
RL36B_YEAST5.399e-1948.9460S ribosomal protein L36-B OS=Saccharomyces cerev... [more]
RL36A_YEAST7.052e-1948.9460S ribosomal protein L36-A OS=Saccharomyces cerev... [more]
RL36_DICDI1.571e-1848.9160S ribosomal protein L36 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC07004C10SK SaltLeaf1 Citrus clementina cDNA clone C07004C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299946 ID=CX299946; Name=CX299946; organism=Citrus clementina; type=EST; length=639bp
GGGTCTTTCTGAAGAATTTTCTGTACTCTGATGTGTATTGTGGGTGTTGG
TAATTACAGGTGATGGCTCCAAAGCAGCCAAATACTGGCCTTTTTGTGGG
TCTAAACAAAGGACATGTCGTGACCAAGAAGGAGTTGCCTCCCCGCCCTT
CTGATAGAAAAGGCAAAACTAGTAAGAGAGTCCATTTTGTGAAGAACCTC
ATTAGGGAGGTTGCTGGTTTTGCTCCCTATGAAAGGAGGATTACTGAACT
TCTTAAAGTTGGGAAAGATAAGCGTGCTTTGAAGGTGGCAAAGAGAAAGT
TGGGCACTCACAAGAGAGCCAAGAAGAAGCGCGAGGAAATGTCCAATGCT
CTACGCAAGATGAGGTCGGCTGGAGGTGCAGAGAAGAAGAAGTGAAGCCT
CATTCAAGGTTTCTTTTAGATTCATCAGTGAAAGAATTTTATTTAGCTTT
TGTTCTTCTAATATTGGAATTTTGGTTAGAGTTTTAGACTTGCTTTGAAA
TGTTAACTGTACTTTGTTTCCAATGAGAGAGTTCAGTTTTGTTTCCTTTG
TCTGTGAAATTTGAGTATCTTGTTACTCACAGTTGCCAGTTTTTTAATCA
TCGATAAGAATTGATTATCCAAAAAAAAAAAAAAAAAAA
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