CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1152..1400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.895e-39
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN G NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.781e-39
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSAT GQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  146 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATFGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 227          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.781e-39
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLI KNCSATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.449e-39
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN G NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.449e-39
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN G NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.449e-39
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN G NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  141 HNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGV 222          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_LOTJA (50S ribosomal protein L2, chloroplastic OS=Lotus japonicus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.423e-39
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEIT GKGG+LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITFGKGGKLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_ILLOL (50S ribosomal protein L2, chloroplastic OS=Illicium oligandrum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.423e-39
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAG VAKLIAKEGKSATL+LPSGEVRL+SKNCSATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  142 HNIEITLGKGGQLARAAGTVAKLIAKEGKSATLRLPSGEVRLVSKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 223          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_PHAAO (50S ribosomal protein L2, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.100e-38
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLISKNC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_LEMMI (50S ribosomal protein L2, chloroplastic OS=Lemna minor GN=rpl2 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.100e-38
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLISKNC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_CUCSA2.895e-3997.5650S ribosomal protein L2, chloroplastic OS=Cucumis... [more]
RK2_PLAOC3.781e-3997.5650S ribosomal protein L2, chloroplastic OS=Platanu... [more]
RK2_MORIN3.781e-3997.5650S ribosomal protein L2, chloroplastic OS=Morus i... [more]
RK2_POPTR6.449e-3996.3450S ribosomal protein L2, chloroplastic OS=Populus... [more]
RK2B_POPAL6.449e-3996.3450S ribosomal protein L2-B, chloroplastic OS=Popul... [more]
RK2A_POPAL6.449e-3996.3450S ribosomal protein L2-A, chloroplastic OS=Popul... [more]
RK2_LOTJA8.423e-3996.3450S ribosomal protein L2, chloroplastic OS=Lotus j... [more]
RK2_ILLOL8.423e-3995.1250S ribosomal protein L2, chloroplastic OS=Illiciu... [more]
RK2_PHAAO1.100e-3896.3450S ribosomal protein L2, chloroplastic OS=Phalaen... [more]
RK2_LEMMI1.100e-3896.3450S ribosomal protein L2, chloroplastic OS=Lemna m... [more]

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Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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