CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1152..1400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SALSV (50S ribosomal protein L2 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.385e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQLAR+AG   +++A++G   TL+L SGE+R +  +C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRG 222
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SALPK (50S ribosomal protein L2 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.385e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQLAR+AG   +++A++G   TL+L SGE+R +  +C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRG 222
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SALPB (50S ribosomal protein L2 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.385e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQLAR+AG   +++A++G   TL+L SGE+R +  +C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRG 222
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SALPA (50S ribosomal protein L2 OS=Salmonella paratyphi A GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.385e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQLAR+AG   +++A++G   TL+L SGE+R +  +C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRG 222
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SALNS (50S ribosomal protein L2 OS=Salmonella newport (strain SL254) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.385e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQLAR+AG   +++A++G   TL+L SGE+R +  +C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRG 222
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SALHS (50S ribosomal protein L2 OS=Salmonella heidelberg (strain SL476) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.385e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQLAR+AG   +++A++G   TL+L SGE+R +  +C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRG 222
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SALG2 (50S ribosomal protein L2 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.385e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQLAR+AG   +++A++G   TL+L SGE+R +  +C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRG 222
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SALEP (50S ribosomal protein L2 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.385e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQLAR+AG   +++A++G   TL+L SGE+R +  +C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRG 222
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SALDC (50S ribosomal protein L2 OS=Salmonella dublin (strain CT_02021853) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.385e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQLAR+AG   +++A++G   TL+L SGE+R +  +C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRG 222
[Close]
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RL2_SALCH (50S ribosomal protein L2 OS=Salmonella choleraesuis GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.385e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 244
            HN+E+  GKGGQLAR+AG   +++A++G   TL+L SGE+R +  +C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  142 HNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRG 222
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SALSV2.385e-1749.3850S ribosomal protein L2 OS=Salmonella schwarzengr... [more]
RL2_SALPK2.385e-1749.3850S ribosomal protein L2 OS=Salmonella paratyphi A... [more]
RL2_SALPB2.385e-1749.3850S ribosomal protein L2 OS=Salmonella paratyphi B... [more]
RL2_SALPA2.385e-1749.3850S ribosomal protein L2 OS=Salmonella paratyphi A... [more]
RL2_SALNS2.385e-1749.3850S ribosomal protein L2 OS=Salmonella newport (st... [more]
RL2_SALHS2.385e-1749.3850S ribosomal protein L2 OS=Salmonella heidelberg ... [more]
RL2_SALG22.385e-1749.3850S ribosomal protein L2 OS=Salmonella gallinarum ... [more]
RL2_SALEP2.385e-1749.3850S ribosomal protein L2 OS=Salmonella enteritidis... [more]
RL2_SALDC2.385e-1749.3850S ribosomal protein L2 OS=Salmonella dublin (str... [more]
RL2_SALCH2.385e-1749.3850S ribosomal protein L2 OS=Salmonella choleraesui... [more]

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Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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