CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1152..1400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_DRIGR (50S ribosomal protein L2, chloroplastic OS=Drimys granadensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.216e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLI KNC ATVGQVGNVG NQK+LGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLIYKNCLATVGQVGNVGVNQKNLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSJ (Uncharacterized protein ycf72 OS=Oryza sativa subsp. japonica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.068e-37
Identity = 71/83 (85.54%), Postives = 73/83 (87.95%), Query Frame = -1
Query:    1 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLC 249
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLC
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLC 100          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSI (Uncharacterized protein ycf72 OS=Oryza sativa subsp. indica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.068e-37
Identity = 71/83 (85.54%), Postives = 73/83 (87.95%), Query Frame = -1
Query:    1 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLC 249
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLC
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLC 100          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSA (Uncharacterized protein ycf72 OS=Oryza sativa GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.068e-37
Identity = 71/83 (85.54%), Postives = 73/83 (87.95%), Query Frame = -1
Query:    1 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLC 249
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLC
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLC 100          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: YCF72_ORYNI (Uncharacterized protein ycf72 OS=Oryza nivara GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.068e-37
Identity = 71/83 (85.54%), Postives = 73/83 (87.95%), Query Frame = -1
Query:    1 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLC 249
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLC
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLC 100          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_SPIOL (50S ribosomal protein L2, chloroplastic OS=Spinacia oleracea GN=rpl2-A PE=1 SV=4)

HSP 1 Score: 154.066 bits (388), Expect = 2.075e-37
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQK LGRAGSK WLGKRPVVRGV
Sbjct:  138 HNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKRLGRAGSKRWLGKRPVVRGV 219          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_DAUCA (50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.710e-37
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEIT G+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  140 HNIEITRGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_PIPCE (50S ribosomal protein L2, chloroplastic OS=Piper cenocladum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.539e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITL KGGQLARAAGAV+KLIAKEGKSATL+LPSGEVRLISKNCSATVGQVGNV  NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITLEKGGQLARAAGAVSKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVEVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_ORYSJ (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.622e-37
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEIT G+GGQLARAAGAVAKLIAKEGKSATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_ORYSI (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.622e-37
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEIT G+GGQLARAAGAVAKLIAKEGKSATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_DRIGR1.216e-3793.9050S ribosomal protein L2, chloroplastic OS=Drimys ... [more]
YCF72_ORYSJ2.068e-3785.54Uncharacterized protein ycf72 OS=Oryza sativa subs... [more]
YCF72_ORYSI2.068e-3785.54Uncharacterized protein ycf72 OS=Oryza sativa subs... [more]
YCF72_ORYSA2.068e-3785.54Uncharacterized protein ycf72 OS=Oryza sativa GN=y... [more]
YCF72_ORYNI2.068e-3785.54Uncharacterized protein ycf72 OS=Oryza nivara GN=y... [more]
RK2_SPIOL2.075e-3795.1250S ribosomal protein L2, chloroplastic OS=Spinaci... [more]
RK2_DAUCA2.710e-3795.1250S ribosomal protein L2, chloroplastic OS=Daucus ... [more]
RK2_PIPCE3.539e-3793.9050S ribosomal protein L2, chloroplastic OS=Piper c... [more]
RK2_ORYSJ4.622e-3791.4650S ribosomal protein L2, chloroplastic OS=Oryza s... [more]
RK2_ORYSI4.622e-3791.4650S ribosomal protein L2, chloroplastic OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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