CX299948

Overview
NameCX299948
Unique NameCX299948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length249
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1152..1400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CUSEX (50S ribosomal protein L2, plastid OS=Cuscuta exaltata GN=rpl2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.345e-36
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+EIT GKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGRAG++ WLGKRPVVRGV
Sbjct:  140 HNLEITRGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAQRWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_SORBI (50S ribosomal protein L2, chloroplastic OS=Sorghum bicolor GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.294e-36
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEIT G+GGQLARAAGAVAKLIAKEGK ATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  138 HNIEITRGRGGQLARAAGAVAKLIAKEGKLATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 219          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_SACOF (50S ribosomal protein L2, chloroplastic OS=Saccharum officinarum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.294e-36
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEIT G+GGQLARAAGAVAKLIAKEGK ATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITRGRGGQLARAAGAVAKLIAKEGKLATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_SACHY (50S ribosomal protein L2, chloroplastic OS=Saccharum hybrid GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.294e-36
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEIT G+GGQLARAAGAVAKLIAKEGK ATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITRGRGGQLARAAGAVAKLIAKEGKLATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_MAIZE (50S ribosomal protein L2, chloroplastic OS=Zea mays GN=rpl2-A PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.294e-36
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEIT G+GGQLARAAGAVAKLIAKEGK ATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  140 HNIEITRGRGGQLARAAGAVAKLIAKEGKLATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_JASNU (50S ribosomal protein L2, chloroplastic OS=Jasminum nudiflorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.996e-36
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQL RAAGAVAKLIAKEGKSATLKLPSGEVRLIS+NCSATVGQVGNVGA  KSLG+AGSK WLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISQNCSATVGQVGNVGAKHKSLGKAGSKRWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.913e-36
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HNIEITLGKGGQLARAAGAVAKLI+KEGKSA +KLPSGEVRLIS+NCSATVGQVGNVG N+KSLGRAGSK WLGKRPVVRGV
Sbjct:  140 HNIEITLGKGGQLARAAGAVAKLISKEGKSAAVKLPSGEVRLISQNCSATVGQVGNVGVNRKSLGRAGSKRWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CUSRE (50S ribosomal protein L2, plastid OS=Cuscuta reflexa GN=rpl2 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.110e-36
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+EIT GKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISK+CSATVGQVGNVG NQKSLGRAG++ WLGKRPVVRGV
Sbjct:  140 HNLEITRGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKSCSATVGQVGNVGVNQKSLGRAGAQRWLGKRPVVRGV 221          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CUSGR (50S ribosomal protein L2, plastid OS=Cuscuta gronovii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.374e-33
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            HN+EIT GKGGQLARAAGA AKLIAKEG+SATLKLPSGE+R ISK CSATVGQVGN+G NQKSLG+AG K WLGKRP+VRG+
Sbjct:  137 HNLEITRGKGGQLARAAGAAAKLIAKEGQSATLKLPSGELRFISKQCSATVGQVGNIGVNQKSLGKAGVKRWLGKRPIVRGL 218          
BLAST of CX299948 vs. ExPASy Swiss-Prot
Match: RK2_CYCTA (50S ribosomal protein L2, chloroplastic OS=Cycas taitungensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.624e-32
Identity = 67/82 (81.71%), Postives = 76/82 (92.68%), Query Frame = 2
Query:    2 HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 247
            H+IEITLGKGGQLARAAGAVA+LIAKEG+S TL+LPSGE+RLIS+NCSAT+GQVGNV AN  +LG+AGSK WLGKRP VRGV
Sbjct:  143 HSIEITLGKGGQLARAAGAVAELIAKEGRSTTLRLPSGEIRLISENCSATIGQVGNVNANNGTLGKAGSKRWLGKRPRVRGV 224          
The following BLAST results are available for this feature:
BLAST of CX299948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_CUSEX1.345e-3692.6850S ribosomal protein L2, plastid OS=Cuscuta exalt... [more]
RK2_SORBI2.294e-3690.2450S ribosomal protein L2, chloroplastic OS=Sorghum... [more]
RK2_SACOF2.294e-3690.2450S ribosomal protein L2, chloroplastic OS=Sacchar... [more]
RK2_SACHY2.294e-3690.2450S ribosomal protein L2, chloroplastic OS=Sacchar... [more]
RK2_MAIZE2.294e-3690.2450S ribosomal protein L2, chloroplastic OS=Zea may... [more]
RK2_JASNU2.996e-3692.6850S ribosomal protein L2, chloroplastic OS=Jasminu... [more]
RK2_PELHO3.913e-3691.4650S ribosomal protein L2, chloroplastic OS=Pelargo... [more]
RK2_CUSRE5.110e-3691.4650S ribosomal protein L2, plastid OS=Cuscuta refle... [more]
RK2_CUSGR2.374e-3382.9350S ribosomal protein L2, plastid OS=Cuscuta grono... [more]
RK2_CYCTA2.624e-3281.7150S ribosomal protein L2, chloroplastic OS=Cycas t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004D01SK SaltLeaf1 Citrus clementina cDNA clone C07004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299948 ID=CX299948; Name=CX299948; organism=Citrus clementina; type=EST; length=249bp
ACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAG
CGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTA
AAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAG
CCGGATCTAAATGTTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
back to top