CX299949

Overview
NameCX299949
Unique NameCX299949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:188..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PSE14 (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            ++GEI  RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:   19 VIGEITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSEAAAAREISYFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_HELHP (Nucleoside diphosphate kinase OS=Helicobacter hepaticus GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 2
Query:   17 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            G++G+II RFE     +  +K + + R  AE  Y     +PFF  L++++ SGPVV M+ EG   V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EIA +F
Sbjct:   16 GVIGKIIDRFESNNLRICAMKKLQLTRCDAEAFYAIHKERPFFKDLVDFMISGPVVVMVLEGNNAVMKNRDLMGATNPKEAEAGTIRADFAQSIDANAVHGSDSLENAKNEIAFFF 131          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_CHLCV (Nucleoside diphosphate kinase OS=Chlamydophila caviae GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +GEI+  FEK GF +  +K++ +    AE  Y    S+PFF  L++++ SGPVV M+ EG+  V   R I+GATNP ++A GTIR       G N +HGSDS+E+A  EI  +F
Sbjct:   18 IGEIVAIFEKSGFRIAAMKMVHLSVKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGDNAVVRNREIMGATNPQEAAQGTIRAQFGESIGINAVHGSDSLENAAIEINYFF 131          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_ALISL (Nucleoside diphosphate kinase OS=Aliivibrio salmonicida (strain LFI1238) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 50/120 (41.67%), Postives = 75/120 (62.50%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            L+G I  R EK G  +   K++++ +  A+  Y +   K FF +L+EY+TSGPV+  + EGE V+   R ++G TNP ++A G++R D AI    N +HGSDS ESA +EIA +F +  I
Sbjct:   19 LIGAIYRRIEKTGMQVVAAKMLSLTKEQAQGFYAEHEGKEFFDALVEYMTSGPVMVQVLEGESVITRYRELMGKTNPDEAACGSLRSDYAISMRYNSVHGSDSPESAAREIAYFFVEDEI 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_ACIAC (Nucleoside diphosphate kinase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 45/116 (38.79%), Postives = 72/116 (62.07%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 367
            ++G+I  RFE  G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV+  + EGE  +   R ++GAT+P ++APGTIR D A     N +HGSD+ E+AQ E++ +FP
Sbjct:   19 VIGQIYARFEAAGLKIAAARMAHLSRQEAEQFYAVHKERPFFKDLVDFMISGPVMIQVLEGENAILKNRELMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAQVEVSFFFP 134          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_PROA2 (Nucleoside diphosphate kinase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            L+G +I + E+ GF +  +K   +    A + Y   S +PF+G L+E+++SGP V MI E E  V   RT+IGAT+PA++A GTIR   A   G NIIHGSDS E+AQ E   +F
Sbjct:   17 LIGAVIDKIERAGFRVVAMKKTKLTAQTAGEFYAVHSQRPFYGELVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAEGTIRNLFADSKGENIIHGSDSAENAQIEAGFFF 131          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_VARPS (Nucleoside diphosphate kinase OS=Variovorax paradoxus (strain S110) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   20 LVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            ++G+I+ RFE  G  +   KL+ + R  AE+ Y     +PFF  L++++ SGPV   + EGE  +   R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +F
Sbjct:   19 VIGKIVSRFEAAGLKIVAAKLVHLSRNEAEQFYSVHKERPFFKDLVDFMISGPVFVQVLEGENAIAKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAANEVAFFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_HALHL (Nucleoside diphosphate kinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 46/114 (40.35%), Postives = 70/114 (61.40%), Query Frame = 2
Query:   23 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 364
            +GEI+ RFE+ G  +   +++ +    AE  Y     +PFF  L+ ++TSGPV+  + EGE  ++  R I+GATNP ++A GT+R D A     N +HGSDS E+A+ EI  +F
Sbjct:   20 IGEILARFERSGLRVVAARMVRLSTEQAESFYAVHKERPFFNDLVGFMTSGPVMVQVLEGEDAIRKNREIMGATNPKEAAAGTLRHDFAESIDANAVHGSDSPETAENEIEFFF 133          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_FRATW (Nucleoside diphosphate kinase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 48/123 (39.02%), Postives = 73/123 (59.35%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            E  ++GEI  RFEK G  +   K+  + +  AE+ Y     +PFF +L+E++ SGPV+  + EGE  +   R ++GATNP ++  GTIR D A     N +HGSD+ ++A +EI  +F D  I
Sbjct:   16 EKNVIGEIYSRFEKAGLRIIAAKMKHLSKAEAERFYAVHKDRPFFSALVEFMISGPVMIQVLEGENAIAKNRELMGATNPKEAKAGTIRADFADSIDANAVHGSDAEDTAAQEIRYFFSDTEI 138          
BLAST of CX299949 vs. ExPASy Swiss-Prot
Match: NDK_FRATT (Nucleoside diphosphate kinase OS=Francisella tularensis subsp. tularensis GN=ndk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 48/123 (39.02%), Postives = 73/123 (59.35%), Query Frame = 2
Query:   11 EGGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 379
            E  ++GEI  RFEK G  +   K+  + +  AE+ Y     +PFF +L+E++ SGPV+  + EGE  +   R ++GATNP ++  GTIR D A     N +HGSD+ ++A +EI  +F D  I
Sbjct:   16 EKNVIGEIYSRFEKAGLRIIAAKMKHLSKAEAERFYAVHKDRPFFSALVEFMISGPVMIQVLEGENAIAKNRELMGATNPKEAKAGTIRADFADSIDANAVHGSDAEDTAAQEIRYFFSDTEI 138          
The following BLAST results are available for this feature:
BLAST of CX299949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PSE141.127e-2042.61Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]
NDK_HELHP1.127e-2042.24Nucleoside diphosphate kinase OS=Helicobacter hepa... [more]
NDK_CHLCV1.127e-2043.86Nucleoside diphosphate kinase OS=Chlamydophila cav... [more]
NDK_ALISL1.127e-2041.67Nucleoside diphosphate kinase OS=Aliivibrio salmon... [more]
NDK_ACIAC1.127e-2038.79Nucleoside diphosphate kinase OS=Acidovorax avenae... [more]
NDK_PROA21.472e-2045.22Nucleoside diphosphate kinase OS=Prosthecochloris ... [more]
NDK_VARPS1.922e-2040.00Nucleoside diphosphate kinase OS=Variovorax parado... [more]
NDK_HALHL1.922e-2040.35Nucleoside diphosphate kinase OS=Halorhodospira ha... [more]
NDK_FRATW1.922e-2039.02Nucleoside diphosphate kinase OS=Francisella tular... [more]
NDK_FRATT1.922e-2039.02Nucleoside diphosphate kinase OS=Francisella tular... [more]

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Properties
Property NameValue
Genbank descriptionC07004D02SK SaltLeaf1 Citrus clementina cDNA clone C07004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299949 ID=CX299949; Name=CX299949; organism=Citrus clementina; type=EST; length=686bp
AATTCGGCACGAGGGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGA
AGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCT
TTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTC
TCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGG
GTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCT
GCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGG
CAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAA
TCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCAC
CCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCC
TGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTA
CTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATC
CTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTA
AGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGCACA
TGATGGTTGCACTTTTTAAAAAAAAAAAAAAAAAAA
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