CX299955

Overview
NameCX299955
Unique NameCX299955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299955 vs. ExPASy Swiss-Prot
Match: PPGB_BOVIN (Lysosomal protective protein OS=Bos taurus GN=CTSA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.180e-13
Identity = 33/91 (36.26%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  226 YRSLIYSGDHDMIIPFLGTEAWIKSLNYSIVDDWRPWILH-----SQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWINHDP 483
            YR L+Y+GD DM   F+G E ++ SLN  +    RPW++       Q+AG+ + +S+ + + T+KG GH  P  +P     MF R++N  P
Sbjct:  389 YRILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVDYGESGEQIAGFVKEFSH-IAFLTIKGAGHMVPTDKPQAALTMFSRFLNRQP 478          

HSP 2 Score: 25.0238 bits (53), Expect = 4.180e-13
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 2
Query:   89 NDHNVRKALHIRQGSKGEWIRCNY 160
            ND +VRKALHI +     W  CN+
Sbjct:  341 NDPHVRKALHIPE-QLPRWDLCNF 363          
BLAST of CX299955 vs. ExPASy Swiss-Prot
Match: SCP30_ARATH (Putative serine carboxypeptidase-like 30 OS=Arabidopsis thaliana GN=SCPL30 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  181 NWQ*FFLSCKPQYK-----GYRSLIYSGDHDMIIPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWINHDPL 486
            NW     S  P Y+     G R  +YSGD D  IP LGT   + +L   I   WRPW    QV+G+ + Y   +T+AT +G GHT P ++P+   A    ++   PL
Sbjct:  375 NWTYVVQSVLPIYQKLIAGGLRIWVYSGDTDGCIPVLGTRYSLNALGLPIKTAWRPWYHEKQVSGWVQEYDG-LTFATFRGAGHTVPSFKPSSSLAFISAFVKGVPL 480          
BLAST of CX299955 vs. ExPASy Swiss-Prot
Match: SCP35_ARATH (Serine carboxypeptidase-like 35 OS=Arabidopsis thaliana GN=SCPL35 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 34/88 (38.64%), Postives = 46/88 (52.27%), Query Frame = 1
Query:  223 GYRSLIYSGDHDMIIPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWINHDPL 486
            G R  IYSGD D  +P   T   IK +   +   WR W   SQVAG+  TY+  + + TV+G GH  P   PA+   +F  +I+  PL
Sbjct:  388 GLRIWIYSGDTDGRVPVTSTRYSIKKMGLKVESPWRSWFHKSQVAGWVETYAGGLNFVTVRGAGHQVPALAPAQSLTLFSHFISSVPL 475          
BLAST of CX299955 vs. ExPASy Swiss-Prot
Match: SCP26_ARATH (Serine carboxypeptidase-like 26 OS=Arabidopsis thaliana GN=SCPL26 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 35/101 (34.65%), Postives = 54/101 (53.47%), Query Frame = 1
Query:  199 LSCKPQYK-----GYRSLIYSGDHDMIIPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWINHDPL 486
            LS  P YK     G R  ++SGD D ++P  GT   I++L    +  W PW    QV G+++ Y   +T  T+ G GH  P +RP   + +FQ ++++ PL
Sbjct:  351 LSMLPIYKELIAAGLRIWVFSGDTDSVVPITGTRYSIRALKLQPLSKWYPWNDDGQVGGWSQVYKG-LTLVTIHGAGHEVPLFRPRRAFLLFQSFLDNKPL 450          
BLAST of CX299955 vs. ExPASy Swiss-Prot
Match: SCP33_ARATH (Serine carboxypeptidase-like 33 OS=Arabidopsis thaliana GN=SCPL33 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 30/88 (34.09%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  223 GYRSLIYSGDHDMIIPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWINHDPL 486
            G +  +YSGD D  +P +G+   +++L  S+  +WR W  + QV G    Y   +T+ TV+G GH  P  +P E  A+F+ ++N   L
Sbjct:  381 GLKIWVYSGDADGRVPVIGSRYCVEALGISVKSEWRSWFHNHQVGGRITEYEGGLTFVTVRGAGHLVPLNKPEEALALFRSFLNGQEL 468          
BLAST of CX299955 vs. ExPASy Swiss-Prot
Match: PPGB_MOUSE (Lysosomal protective protein OS=Mus musculus GN=Ctsa PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  226 YRSLIYSGDHDMIIPFLGTEAWIKSLNYSIVDDWRPWILH-----SQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWINHDP 483
            Y+ L+Y+GD DM   F+G E ++ SLN  +    RPW++       QVAG+ +  S+ +T+ T+KG GH  P  +P   + MF R++N +P
Sbjct:  384 YQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVDYGESGEQVAGFVKECSH-ITFLTIKGAGHMVPTDKPRAAFTMFSRFLNKEP 473          
BLAST of CX299955 vs. ExPASy Swiss-Prot
Match: SCP27_ARATH (Serine carboxypeptidase-like 27 OS=Arabidopsis thaliana GN=SCPL27 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 32/106 (30.19%), Postives = 55/106 (51.89%), Query Frame = 1
Query:  184 WQ*FFLSCKPQYK-----GYRSLIYSGDHDMIIPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWINHDPL 486
            W    LS  P YK     G +  ++SGD D ++P   T   + +L  + + +W PW  H +V G+++ Y   +T  TV G GH  P +RP + + +F+ ++   P+
Sbjct:  352 WDDSPLSMLPIYKELITAGLKIWVFSGDTDAVVPITATRYSVDALKLATITNWYPWYDHGKVGGWSQVYKG-LTLVTVAGAGHEVPLHRPRQAFILFRSFLESKPM 456          
BLAST of CX299955 vs. ExPASy Swiss-Prot
Match: SCP23_ARATH (Putative serine carboxypeptidase-like 23 OS=Arabidopsis thaliana GN=SCPL23 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 33/102 (32.35%), Postives = 50/102 (49.02%), Query Frame = 1
Query:  181 NWQ*FFLSCKPQYK-----GYRSLIYSGDHDMIIPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWI 471
            NW+    S  P YK     G R  ++SGD D ++P  GT   +  LN  +   W PW    QV G+T  Y   +T+AT++G GH  P  +P     + + ++
Sbjct:  345 NWKDSEFSMLPIYKELTAAGLRIWVFSGDTDAVVPVTGTRLALSKLNLPVKTPWYPWYSEKQVGGWTEVYEG-LTFATIRGAGHEVPVLQPERALTLLRSFL 445          
BLAST of CX299955 vs. ExPASy Swiss-Prot
Match: PPGB_HUMAN (Lysosomal protective protein OS=Homo sapiens GN=CTSA PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 32/91 (35.16%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  226 YRSLIYSGDHDMIIPFLGTEAWIKSLNYSIVDDWRPWILH-----SQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWINHDP 483
            Y+ L+Y+GD DM   F+G E ++ SLN  +    RPW++       Q+AG+ + +S+ + + T+KG GH  P  +P   + MF R++N  P
Sbjct:  390 YQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSH-IAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 479          
BLAST of CX299955 vs. ExPASy Swiss-Prot
Match: SCP46_ARATH (Serine carboxypeptidase-like 46 OS=Arabidopsis thaliana GN=SCPL46 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.973e-11
Identity = 30/92 (32.61%), Postives = 46/92 (50.00%), Query Frame = 1
Query:  223 GYRSLIYSGDHDMIIPFLGTEAWIKSLNYSI----VDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWINHDPL 486
            G    +YSGD D +IP  G+   +K L   +       +R W    QV G+T+ Y N + +ATV+G  H  P  +PA    +F+ ++   PL
Sbjct:  370 GVPVFVYSGDQDSVIPLTGSRTLVKRLAEELGLRTTVPYRVWFAGQQVGGWTQVYGNTLAFATVRGAAHEVPFSQPARALVLFKAFLGGRPL 461          

HSP 2 Score: 23.483 bits (49), Expect = 5.973e-11
Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 2
Query:   89 NDHNVRKALHIRQGSKGEWIRCNYDLPY 172
            N  +V+KALH R     +W  C+  L Y
Sbjct:  323 NRRDVQKALHARLVGTRKWTVCSDVLDY 350          
The following BLAST results are available for this feature:
BLAST of CX299955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
PPGB_BOVIN4.180e-1336.26Lysosomal protective protein OS=Bos taurus GN=CTSA... [more]
SCP30_ARATH8.047e-1336.45Putative serine carboxypeptidase-like 30 OS=Arabid... [more]
SCP35_ARATH1.373e-1238.64Serine carboxypeptidase-like 35 OS=Arabidopsis tha... [more]
SCP26_ARATH5.216e-1234.65Serine carboxypeptidase-like 26 OS=Arabidopsis tha... [more]
SCP33_ARATH1.162e-1134.09Serine carboxypeptidase-like 33 OS=Arabidopsis tha... [more]
PPGB_MOUSE1.518e-1137.36Lysosomal protective protein OS=Mus musculus GN=Ct... [more]
SCP27_ARATH2.588e-1130.19Serine carboxypeptidase-like 27 OS=Arabidopsis tha... [more]
SCP23_ARATH2.588e-1132.35Putative serine carboxypeptidase-like 23 OS=Arabid... [more]
PPGB_HUMAN3.381e-1135.16Lysosomal protective protein OS=Homo sapiens GN=CT... [more]
SCP46_ARATH5.973e-1132.61Serine carboxypeptidase-like 46 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004D08SK SaltLeaf1 Citrus clementina cDNA clone C07004D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299955 ID=CX299955; Name=CX299955; organism=Citrus clementina; type=EST; length=660bp
AGCAATCTCAAGAATTCCTTAATCCTGAACAACATTTCCTCCGATTGGCT
GTCGATCTTATGGATATTTGCTCGCTCGCTATTGGGATAATGACCATAAT
GTCCGTAAGGCACTTCATATAAGACAGGGAAGCAAAGGTGAATGGATACG
CTGCAATTATGATTTACCTTATACGCATGAAATTGGCAATAGTTTTTCCT
ATCATGTAAGCCTCAGTACAAAGGCTACCGCTCTTTAATATATAGTGGGG
ACCATGACATGATCATACCATTCCTGGGAACAGAGGCGTGGATAAAATCT
CTCAATTACTCCATTGTTGATGACTGGAGGCCGTGGATTCTCCACAGCCA
AGTTGCAGGGTATACGAGGACTTACTCCAATCAGATGACGTATGCCACTG
TAAAGGGAGGAGGGCACACTGCTCCTGAGTACAGGCCTGCGGAATGTTAT
GCTATGTTTCAAAGATGGATAAATCATGATCCATTGTAGTTGCCTGCAAT
TTCTAGCTAGTATTTGGTCCAAAGTAATCTATATCAATAATTGATCATGT
ATGATCATGTTTCCTCATGTTAGGTATCAGTGTTGACAATAAACAGACAT
TCATGAAAAGCACACATTCATAATAAATGGAAGCTAATTTTACCAAAAAA
AAAAAAAAAA
back to top