CX299958

Overview
NameCX299958
Unique NameCX299958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = -3
Query:  383 YYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 529
            YYGRGPIQLTG  NY  AG A+G D + +P+ V+ D V+SFKTA+W+WM
Sbjct:  128 YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWM 176          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+W+WM
Sbjct:  185 GRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWM 236          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D +ISFK+A+W+WM
Sbjct:  173 GRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWM 224          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK Y+GRGPIQ++ N NY  AG+A+GFDGL +PE VA    I+F+TALW+WM
Sbjct:  156 GKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWM 207          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.997e-12
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G  YYGRGPIQLTG  NY  AG+AI  D +N+P+ VA D  +SFKTA+W+WM
Sbjct:  117 GNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWM 168          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.608e-12
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK Y+GRGP+QLT N NY   GRAIG D LN+P+ +A D  ISFK+A W+WM
Sbjct:  178 GKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWM 229          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = -3
Query:  383 YYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 529
            YYGRGPIQLT   NY  AG AIG + +N+P+ VA D  ISFKTA+W+WM
Sbjct:  119 YYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWM 167          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK YYGRGP+QL+ N NY   G A+  + L +P+ VA DRV+SFKTALW+WM
Sbjct:  108 GKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWM 159          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK YYGRGPIQ++ N NY  AG+AIG + L++P+ VA D  +SFKTA W+WM
Sbjct:  187 GKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWM 238          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.294e-11
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = -3
Query:  383 YYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 529
            YYGRGPIQLT   NY  AG AI  D +N+P+ VA D  ISFKTA+W+WM
Sbjct:  119 YYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWM 167          
The following BLAST results are available for this feature:
BLAST of CX299958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI8_ORYSJ1.529e-1261.22Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_SOLTU1.529e-1261.54Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU1.529e-1259.62Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI10_ORYSJ1.529e-1261.54Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY1.997e-1261.54Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI1_THECC2.608e-1261.54Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIQ_TOBAC5.809e-1263.27Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIT_CARPA9.909e-1259.62Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI1_ORYSJ9.909e-1259.62Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_TOBAC1.294e-1163.27Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC07004D11SK SaltLeaf1 Citrus clementina cDNA clone C07004D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299958 ID=CX299958; Name=CX299958; organism=Citrus clementina; type=EST; length=540bp
AGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACTGCAAATCATCCATTAATTTTCTCTTTATTTTATGATCAGGTACAC
AAAAATTATTCCATCAGAGTTACCAAACAAAGAAAGTTGTTTGGAATAAC
TCTGGCTTACTGGGATATAATATAATACACATAGTGTAACATTTTCATAC
CAAATATCTAATCAGCACTCGAGATTTGGTCTGGGATTGTTACCCCATGT
GTTTTATTTTTTATCGCGGGGGGCCGGGGTTTTTCCAACCCCCTTTCTTT
GTTGGGTCGCCCGGTTGGGATGATTTTTGATTTTCCGAATTGTTTCACCG
AGACCTTGGTTTAGTGCTGAGTGCACGTATCTCATCCAATACCACAAAGC
AGTCTTGAAAGATATGACACGGTCCCTGGCCACCGTTTCCGGAGAGTTCA
GACCGTCGAAACCGATGGCCCTTCCGGCATCTATGTAGTTTCCGTTTCCG
GTGAGCTGAATCGGTCCCCGGCCATAGTAGAATTTACCAT
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