CX299958

Overview
NameCX299958
Unique NameCX299958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.294e-11
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK YYGRGPIQL+ N NY  AG+AIG D L  P+ VA D  +SF TA W+WM
Sbjct:  190 GKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWM 241          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK Y+GRGP+QL+ N NY   GRAIG D LN+P+ ++ D  ISFK+A W+WM
Sbjct:  159 GKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWM 210          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK Y+GRGP+QL+ N NY   GRAIG D LN+P+ ++ D  ISFK+A W+WM
Sbjct:  181 GKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWM 232          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            G+ YYGRGPIQ++ N NY   GRAIG + LN+P+ VA + V+SFK+A+W+WM
Sbjct:  191 GQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWM 242          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.423e-11
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK YYGRGPIQLT N NY  AG+AI  D +N+P+ ++ +  +SFKTA+W+WM
Sbjct:  185 GKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWM 236          
BLAST of CX299958 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 6.423e-11
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = -3
Query:  383 GKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM 538
            GK Y  RGPIQLT N NY  AG+AIG D + +P+ V +D +ISFKTALW+WM
Sbjct:  233 GKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWM 284          
The following BLAST results are available for this feature:
BLAST of CX299958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI12_ORYSJ1.294e-1161.54Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI2_GOSHI1.690e-1157.69Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI1.690e-1157.69Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI3_TOBAC2.207e-1157.69Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIX_PEA6.423e-1157.69Endochitinase OS=Pisum sativum PE=2 SV=1[more]
AGI_URTDI6.423e-1161.54Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004D11SK SaltLeaf1 Citrus clementina cDNA clone C07004D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299958 ID=CX299958; Name=CX299958; organism=Citrus clementina; type=EST; length=540bp
AGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACTGCAAATCATCCATTAATTTTCTCTTTATTTTATGATCAGGTACAC
AAAAATTATTCCATCAGAGTTACCAAACAAAGAAAGTTGTTTGGAATAAC
TCTGGCTTACTGGGATATAATATAATACACATAGTGTAACATTTTCATAC
CAAATATCTAATCAGCACTCGAGATTTGGTCTGGGATTGTTACCCCATGT
GTTTTATTTTTTATCGCGGGGGGCCGGGGTTTTTCCAACCCCCTTTCTTT
GTTGGGTCGCCCGGTTGGGATGATTTTTGATTTTCCGAATTGTTTCACCG
AGACCTTGGTTTAGTGCTGAGTGCACGTATCTCATCCAATACCACAAAGC
AGTCTTGAAAGATATGACACGGTCCCTGGCCACCGTTTCCGGAGAGTTCA
GACCGTCGAAACCGATGGCCCTTCCGGCATCTATGTAGTTTCCGTTTCCG
GTGAGCTGAATCGGTCCCCGGCCATAGTAGAATTTACCAT
back to top