CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:966..1395. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPA (D-erythrose-4-phosphate dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=epd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.764e-11
Identity = 32/107 (29.91%), Postives = 52/107 (48.60%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 322
            +LP +K K   I++RVPT N          +K+   E VN   +++ +    G++   +EPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  221 ILPHMKDKFEAISVRVPTINVTAIDLSVTLNKRVDIETVNQVLKQATEGSFSGVVGFTNEPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_SHESW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=epd PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 35/107 (32.71%), Postives = 49/107 (45.79%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 322
            +LP +K K   I++RVPT N          +K      VN     +A+    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  221 ILPHMKDKFEAISVRVPTINVTAIDLSVTLAKTVDIASVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPC (D-erythrose-4-phosphate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=epd PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 35/107 (32.71%), Postives = 49/107 (45.79%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 322
            +LP +K K   I++RVPT N          +K      VN     +A+    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  221 ILPHMKDKFEAISVRVPTINVTAIDLSVTLAKTVDIASVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_SHEHH (D-erythrose-4-phosphate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=epd PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 32/107 (29.91%), Postives = 52/107 (48.60%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 322
            +LP +K K   I++RVPT N          +K+   E VN   +++ +    G++   +EPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  221 ILPHMKNKFEAISVRVPTINVTAIDLSVTLNKRVDIELVNRVLKQATEGSFSGVVGFTNEPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_SHEB2 (D-erythrose-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=epd PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 35/107 (32.71%), Postives = 48/107 (44.86%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 322
            +LP +K K   I++RVPT N           K      VN     +A+    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  221 ILPHMKDKFEAISVRVPTINVTAIDLSVTLEKTVDIATVNHVLESAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 33/100 (33.00%), Postives = 50/100 (50.00%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 301
            V+P L GKL G+A RVPT +           K    E++ AA + +++  +KGIL   ++ +VS DF                +    VK+++WYDNEWG
Sbjct:  213 VIPELNGKLTGMAFRVPTQDVSVVDLTCILEKPAKYEDIMAALKAASEGPMKGILGYTEDDVVSSDFVSDPASSTVDAKAGIMLSPTFVKLVSWYDNEWG 312          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_SHESR (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=epd PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.158e-11
Identity = 35/107 (32.71%), Postives = 48/107 (44.86%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 322
            +LP +K K   I++RVPT N           K      VN     +A+    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  221 ILPHMKDKFEAISVRVPTINVTAIDLSVTLDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_SHESM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=epd PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.158e-11
Identity = 35/107 (32.71%), Postives = 48/107 (44.86%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 322
            +LP +K K   I++RVPT N           K      VN     +A+    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  221 ILPHMKDKFEAISVRVPTINVTAIDLSVTLDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_SHESA (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=epd PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.158e-11
Identity = 35/107 (32.71%), Postives = 48/107 (44.86%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 322
            +LP +K K   I++RVPT N           K      VN     +A+    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  221 ILPHMKDKFEAISVRVPTINVTAIDLSVTLDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIIDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_SHEON (D-erythrose-4-phosphate dehydrogenase OS=Shewanella oneidensis GN=epd PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.158e-11
Identity = 35/107 (32.71%), Postives = 48/107 (44.86%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 322
            +LP +K K   I++RVPT N           K      VN     +A+    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  221 ILPHMKDKFEAISVRVPTINVTAIDLSVTLDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
E4PD_SHEPA2.764e-1129.91D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHESW3.610e-1132.71D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEPC3.610e-1132.71D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEHH3.610e-1129.91D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEB23.610e-1132.71D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3PC_SCEVA4.715e-1133.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
E4PD_SHESR6.158e-1132.71D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHESM6.158e-1132.71D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHESA6.158e-1132.71D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEON6.158e-1132.71D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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