CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:966..1395. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+PAL GKL G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  217 VIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18
Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLPAL GKL G+A RVPTP+           K    +E+ AA +  ++  LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  225 VLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDL 332          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18
Identity = 49/109 (44.95%), Postives = 63/109 (57.80%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 328
            VLP ++GKL+G+ALRVPT N           +     +VN AF+ +   +L G+L V + PLVSVDF                MG + VKVIAWYDNEWGYS RVV++A
Sbjct:  220 VLPEVEGKLHGMALRVPTKNVSLVDLVVDLEQNVTVTQVNDAFKNA---DLSGVLDVEEAPLVSVDFNTNPHSAIIDSQSTMVMGQNKVKVIAWYDNEWGYSNRVVEVA 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 328
            VLP LKG+L+G+++RVPTPN          ++ T  EEVNAA   +A   LKG+L    EP VS DF                M   MV++++WYDNEWG+S R+ D A
Sbjct:  218 VLPELKGRLDGVSIRVPTPNVSVVDLVFEAARDTTVEEVNAAIEAAACGPLKGVLGFTTEPNVSSDFNHDPHSSVFHMDQTKVMEGRMVRILSWYDNEWGFSNRMADTA 326          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+PAL GKL G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  217 VIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+PAL GKL G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  217 VIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.335e-18
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESAD-NELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 328
            V+P LKGKL+GI++RVPTP+           + T AEE+N+  + +AD  ++ G+L   DEPLVS DF                +   + +V+AWYDNEWG+S R+VD A
Sbjct:  221 VIPELKGKLDGISIRVPTPDVSLVDFTFVPQRDTTAEEINSVLKAAADTGDMTGVLGYTDEPLVSRDFYSDPHSSTVDSRETAVLEGKLARVVAWYDNEWGFSNRMVDTA 330          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.335e-18
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+PAL GKL G+A+RVPT N           K    +E+  A + +A NEL+GILS  ++ +VS D                 + D+ VK++AWYDNEW YS+RV+DL   +A
Sbjct:  220 VIPALNGKLTGMAMRVPTANVSVVDLTCRIEKSATYDEIKKAIKIAAGNELQGILSYTEDEIVSTDLIGNNHSSIFDAKAGISLNDNFVKLVAWYDNEWAYSRRVIDLISYIA 332          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.049e-18
Identity = 45/113 (39.82%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+A RVPT N           K    E + AA +E+++ ELKGIL   ++ +VS D                 + D+ VK+++WYDNEWGYS+RV+DL   VA
Sbjct:  219 VIPELNGKLTGMAFRVPTSNVSVVDLTCRLEKPASYETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 3.049e-18
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GKL G+A+RVPT N           K T  +E+  A +++++NELKGIL   ++ +VS D                 +  + VK+++WYDNEWGYS+RVVDL
Sbjct:  219 VIPTLNGKLTGMAMRVPTSNVSVVDLTCRLEKATSYDEIKKALKDASENELKGILGYTEDDIVSSDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDL 326          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3P_DROHY1.788e-1843.52Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3PC_PINSY1.788e-1841.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_STAES1.788e-1844.95Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_RHOSH1.788e-1842.20Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P2_DROPS1.788e-1843.52Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME1.788e-1843.52Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_ZYMMO2.335e-1840.91Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3P_ERYGR2.335e-1839.82Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_PODAN3.049e-1839.82Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_ASPNG3.049e-1839.81Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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