CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:966..1395. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.872e-18
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP L GKL G++ RVPT +           KK   E++ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  222 VLPQLNGKLTGMSFRVPTVDVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDL 329          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.872e-18
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 346
            VLP L+GKL G+A RVPT +          +K    EE+ A  +++++NELKG++   ++ +VS DF                +    VK+++WYDNE+GYS RVVDL ++VA N
Sbjct:  217 VLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKPATYEEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAKN 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.872e-18
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 346
            VLP L+GKL G+A RVPT +          +K    EE+ A  +++++NELKG++   ++ +VS DF                +    VK+++WYDNE+GYS RVVDL ++VA N
Sbjct:  217 VLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKPATYEEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAKN 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.159e-17
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P+L GKL G++ RVPT +           K+   +E+ AA +E+    LKGIL   ++ LVS DF                +  + VK+IAWYDNEWGYS+RVVDL   VA
Sbjct:  219 VIPSLNGKLTGLSFRVPTLDVSVVDLVVRLEKEATYDEIKAAVKEAVAGPLKGILDYTEDALVSTDFTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.159e-17
Identity = 47/113 (41.59%), Postives = 60/113 (53.10%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+PA+KGKL G+A RVPT +          +K    EE+ A  +  A+ ++KG L   DEPLVS DF                +    VK++AWYDNEWGYS RV DL   VA
Sbjct:  266 VIPAVKGKLTGMAFRVPTIDVSVVDLTCRLAKDATYEEICAEVKRRANGDMKGFLGYTDEPLVSTDFETEPISSTFDAEAGISLNPRFVKLVAWYDNEWGYSNRVKDLMVHVA 378          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.159e-17
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 343
            V+PAL GKL G+A RVPTP+          +K T  E++ AA + +++  +KG+L   ++ +VS DF                +    VK+++WYDNEWGYS RVVDL    A+
Sbjct:  220 VIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTAS 333          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.159e-17
Identity = 43/113 (38.05%), Postives = 63/113 (55.75%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+PAL GKL G+A RVPTP+          +K T  E++ AA + +++  +KG+L   ++ +VS DF                +    VK+++WYDNEWGYS+RVVDL    A
Sbjct:  220 VIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAYTA 332          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.159e-17
Identity = 46/108 (42.59%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+PAL GKL G+A RVPTPN           K    +E+ A   E++   LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  217 VIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGATYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.513e-17
Identity = 50/109 (45.87%), Postives = 62/109 (56.88%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 328
            VLP LKGKLNG+A+RV T N          +K+   EEVNAA +  A+ ELKGIL+   EPLV  ++                +   MVKV++WYDNE GYS RVV LA
Sbjct:  220 VLPELKGKLNGMAMRVATANVSVVDLVYELAKEVTVEEVNAALKAIAEGELKGILAYSIEPLVIRNYNGSTVSSTIDILSTMVIDGAMVKVVSWYDNETGYSHRVVALA 328          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.976e-17
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 343
            V+P L GKL G+A RVPTP+           K    +E+ AA +E+A+  +KGIL   ++ +VS DF                +  + VK+IAWYDNE+GYS RVVDL   +A+
Sbjct:  225 VIPGLNGKLTGMANRVPTPDVSVVDLTCRLQKGATMDEIKAAVKEAANGPMKGILEYTEDQVVSTDFTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIAS 338          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3PC_ANTMA8.872e-1840.74Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_KLUMA8.872e-1838.26Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLUMA8.872e-1838.26Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_OMPOL1.159e-1740.71Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3PA_GUITH1.159e-1741.59Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_SCHPO1.159e-1737.72Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P1_SCHPO1.159e-1738.05Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P1_DROME1.159e-1742.59Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_BACCO1.513e-1745.87Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_BRUMA1.976e-1739.47Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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