CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:966..1395. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P+L GKL G+++RVPT +           K    E++    R++A+ E KGI++  DE +VS DF                +  + VK+IAWYDNEWGYS+RV +L   VA
Sbjct:  218 VIPSLNGKLTGLSMRVPTQDVSVVDLVVRLEKPASYEQIKEVMRKAAEGEYKGIIAYTDEDVVSTDFISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVA 330          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP L GKL G+A RVPTPN           K    E++ AA + +A+ E+KG+L   ++ +VS DF                + D+ VK+++WYDNE GYS +V+DL
Sbjct:  218 VLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP L GKL G+A RVPTPN           K    E++ AA + +A+ E+KG+L   ++ +VS DF                + D+ VK+++WYDNE GYS +V+DL
Sbjct:  218 VLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP L GKL G+A RVPTPN           K    E++ AA + +A+ E+KG+L   ++ +VS DF                + D+ VK+++WYDNE GYS +V+DL
Sbjct:  218 VLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP L GKL G+A RVPTPN           K    E++ AA + +A+ E+KG+L   ++ +VS DF                + D+ VK+++WYDNE GYS +V+DL
Sbjct:  218 VLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKPATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP L GKL G+A RVPTPN           K    E++ AA + +A+ E+KG+L   ++ +VS DF                + D+ VK+++WYDNE GYS +V+DL
Sbjct:  218 VLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP L GKL G+A RVPTPN           K    E++ AA + +A+ E+KG+L   ++ +VS DF                + D+ VK+++WYDNE GYS +V+DL
Sbjct:  218 VLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP L GKL G+A RVPTPN           K    E++ AA + +A+ E+KG+L   ++ +VS DF                + D+ VK+++WYDNE GYS +V+DL
Sbjct:  218 VLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.750e-17
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+PA+ GK+ G++ RVP+ N           K    EE+ +A +++AD ELKGI++   + +VS D                 +  + VK+++WYDNEWGYS+RV+DL + VA
Sbjct:  219 VIPAMNGKITGMSFRVPSANVSVIDLTVRLEKAASYEEITSAIKKAADGELKGIMAYTSDEVVSTDMLGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.750e-17
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 343
            V+P L GKL G+A RVPTPN           K    +++    +++A+  LKGIL   ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL   +A+
Sbjct:  218 VIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQAAEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMAS 331          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3P2_AGABI4.403e-1738.05Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P1_SHIFL4.403e-1738.89Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY4.403e-1738.89Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI4.403e-1738.89Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ESCF34.403e-1738.89Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOLI4.403e-1738.89Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL64.403e-1738.89Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO574.403e-1738.89Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_TRIAT5.750e-1736.28Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_RAT5.750e-1737.72Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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