CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:966..1395. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.750e-17
Identity = 44/113 (38.94%), Postives = 61/113 (53.98%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+++RVPTPN           K    +E+ A  +E+A+  L GIL   ++ +VS D                 +  + VK+IAWYDNEWGYS+RV+DL   VA
Sbjct:  219 VIPDLNGKLTGMSMRVPTPNVSVVDLTVRIEKGATYDEIKATVKEAANGSLAGILGYTEDDIVSSDMNGNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.750e-17
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLPAL GKL G++ RVPT +           K+   E++ AA +E ++ ++KGIL   ++ +VS DF                +  + VK+++WYDNEWGYS RVVDL
Sbjct:  222 VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEQIKAAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDL 329          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.750e-17
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLPAL GKL G++ RVPT +           K    +E+  A +E ++ +LKGIL   ++ +VS DF                + D  VK+++WYDNEWGYS RVVDL
Sbjct:  224 VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDL 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.750e-17
Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 352
            + P LKGKLNGIA+RVP  N          ++ T  EE+NA  + +++   L+GIL   + PLVS+D++               + +  VK++AWYDNEWGY  R+V+LA  VA + K
Sbjct:  220 IYPELKGKLNGIAVRVPLLNASLTDCVFEVNRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVELARKVALSLK 337          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.750e-17
Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 352
            + P LKGKLNGIA+RVP  N          ++ T  EE+NA  + +++   L+GIL   + PLVS+D++               + +  VK++AWYDNEWGY  R+V+LA  VA + K
Sbjct:  220 IYPELKGKLNGIAVRVPLLNASLTDCVFEVTRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVELARKVALSLK 337          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.510e-17
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 343
            V+P L GKL G+A RVPTPN           K    E++    +++++  LKGIL   ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL   +A+
Sbjct:  218 VIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMAS 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.510e-17
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P+L GKL G+++RVPT N           K    +++    +++++ ELKGIL   ++ LVS D                 + D  +K+I+WYDNEWGYS+RVVDL   +A
Sbjct:  219 VIPSLNGKLTGMSMRVPTANVSVVDLTCKTEKPVTYDQIKQTIKKASEGELKGILGYSEDALVSSDLNGDSRSSIFDASAGIALNDHFIKLISWYDNEWGYSRRVVDLIAYIA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.510e-17
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP L GKL G+  RVPT +           K     E+ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RV+DL
Sbjct:  225 VLPVLNGKLTGMCFRVPTQDVSVVDLTVKLEKSATYGEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDL 332          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.510e-17
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP L GKL G+A RVPT +           K    + +  A +E+++ ++KGIL   ++ +VS DF                + D  VK++AWYDNEWGYS RVVDL
Sbjct:  224 VLPELNGKLTGMAFRVPTTDVSVVDLTVRLEKPASYDAIKTAIKEASEGQMKGILGYTEDDVVSTDFITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVDL 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.510e-17
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLPAL GKL G+A RVPT +           K    +E+ AA +  ++  LKGIL   ++ +VS DF                +  + VKV++WYDNEWGYS RV+DL
Sbjct:  221 VLPALNGKLTGMAFRVPTVDVSVVDLTARLEKAATYDEIKAAIKHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDL 328          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3P_CLAPU5.750e-1738.94Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P_ATRNU5.750e-1738.89Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_ARATH5.750e-1739.81Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_ANAVT5.750e-1738.98Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P3_ANASP5.750e-1738.98Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P_CRIGR7.510e-1737.72Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_AJECA7.510e-1736.28Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3PC_TAXBA7.510e-1738.89Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA7.510e-1738.89Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR7.510e-1739.81Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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