CX300194

Overview
NameCX300194
Unique NameCX300194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:432..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_GLOVI (Biosynthetic arginine decarboxylase OS=Gloeobacter violaceus GN=speA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.059e-20
Identity = 61/144 (42.36%), Postives = 76/144 (52.78%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVD----GLC----------DFVAKEIG--ASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFI---GGGTSLPLHEMVGGGCGERGPYYLGMF 377
            A Q K+  +  F  G LG+ + A  +    G C          D++  E+     +   TY+ N S+F S PD WAI QLFPI+PIH LDE P  RG L+DLTCDSDGKID+FI        L LH +         PYYLGMF
Sbjct:  395 ASQFKEEALSLFALGYLGLGERARAERLYWGCCEKILNLVRELDYIPDELADLEKNMASTYYCNFSVFQSAPDSWAIDQLFPIMPIHRLDEEPKARGTLADLTCDSDGKIDQFIDLRDVKGVLELHPV-----RPEEPYYLGMF 533          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA2_SYNY3 (Biosynthetic arginine decarboxylase 2 OS=Synechocystis sp. (strain PCC 6803) GN=speA2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.383e-20
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 3
Query:   90 DFVAKEIGASDPVRT--YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFI---GGGTSLPLHEMVGGGCGERGPYYLGMF 377
            +++ ++  A D + T  Y+VNLS+F S P+ W++ QLFPI+PIHHL+E+P  R +L+DLTCDSDGKID+FI      + L +H +   G     PYYLGMF
Sbjct:  467 EYIPEDFQALDKIMTDIYYVNLSVFQSAPESWSLDQLFPILPIHHLNEKPSQRVILADLTCDSDGKIDRFIDLWDVKSYLEVHPLENDG----NPYYLGMF 563          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_THEEB (Biosynthetic arginine decarboxylase OS=Thermosynechococcus elongatus (strain BP-1) GN=speA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.358e-20
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMF 377
            Y++NLS+F S+PD WAI QLFPI+PIH LDE P  RG+L+DLTCDSDGKID+FI       + E+     GE  PYYLG+F
Sbjct:  462 YYINLSVFQSVPDSWAIDQLFPIMPIHRLDEEPTERGILADLTCDSDGKIDQFIDLRDVKSVLELHPFRPGE--PYYLGLF 540          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA1_SYNY3 (Biosynthetic arginine decarboxylase 1 OS=Synechocystis sp. (strain PCC 6803) GN=speA1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 58/147 (39.46%), Postives = 79/147 (53.74%), Query Frame = 3
Query:    6 DQLKQRCIEQFKDGTLGIEQLATVDGLC--------------DFVAKEIGASDP--VRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFI---GGGTSLPLHEMV----GGGCGERGPYYLGMF 377
            +Q K   I  F  G LG+++ A  + L               ++V  ++   +      Y+ N+S+F S PD WAI QLFPI+PIH LDE P  RG+L+D+TCDSDGKID+FI      + L LH ++     G      PYYLGMF
Sbjct:  445 EQFKTEAISLFNFGYLGLKERAKAEELYWACCRKILQICRQQEYVPDDLENLEVNLASIYYANMSVFQSAPDSWAIDQLFPIMPIHRLDEEPTQRGILADITCDSDGKIDQFIDLRDVKSVLELHPLIEVHQPGTPPRVEPYYLGMF 591          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SYNR3 (Biosynthetic arginine decarboxylase OS=Synechococcus sp. (strain RCC307) GN=speA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.607e-19
Identity = 57/126 (45.24%), Postives = 75/126 (59.52%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLAT-VDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMF 377
            A+QL   C     D   G E+L   + GL     K   AS    TY+ NLS+F S PD WAI QLFP++PIH L+E+P   G  +DLTCDSDGK+ +FI  G++ PL E+     GE  PY++G+F
Sbjct:  428 AEQLYWACCSAIADLLPGEEELPDELKGL-----KAAFAS----TYYANLSVFRSAPDTWAIDQLFPVMPIHRLEEQPRELGSFADLTCDSDGKLARFIASGSAKPLLELHELKDGE--PYWIGLF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SYNPX (Biosynthetic arginine decarboxylase OS=Synechococcus sp. (strain WH8102) GN=speA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.908e-19
Identity = 54/142 (38.03%), Postives = 77/142 (54.23%), Query Frame = 3
Query:    9 QLKQRCIEQFKDGTLGIEQLATVDGL----CDFVAKEIGASDPVR------------TYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTS---LPLHEMVGGGCGERGPYYLGMF 377
            + KQ  +  F+ G +G+   A+ + L     D +A+ +     +             TY+ NLSIF S PD WAI QLFP+VPI  L++RP     L+DLTCDSDG++D+FIG G     L LHE+      +  PY +G+F
Sbjct:  410 KFKQDALAAFRLGYMGLPDRASAEQLTWACADAIAQRLPKEQAIPEELAALSKALAGTYYANLSIFRSAPDTWAIDQLFPVVPIQKLNQRPTRLANLADLTCDSDGRLDRFIGDGQPKQLLELHEL-----DDNNPYLIGLF 546          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PROMA (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus GN=speA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 53/139 (38.13%), Postives = 73/139 (52.52%), Query Frame = 3
Query:    9 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDP----------------VRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMF 377
            + K+  +  F+ G + + + AT + L    AK+I A  P                  TY+ N+SIF S PD WAI QLFP++PIH L E+P   G  +DLTCDSDGK+ +FI  G    L E+      E   Y++GMF
Sbjct:  414 KFKEDALNAFRLGFIDLTERATAEQLTWACAKQIAAHLPNDLKIPKELLAINKGLTETYYANISIFRSAPDTWAIQQLFPLLPIHRLQEKPDQLGHFADLTCDSDGKLARFINNGQEKFLLELHTVKANEN--YWIGMF 550          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PROMM (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9313) GN=speA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.765e-18
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 3
Query:  132 TYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMF 377
            TY+ NLSIF S PD WAI QLFP++PIH L+E P   G  +DLTCDSDGK+D+FIG G   T L LH +      +   Y +GMF
Sbjct:  471 TYYANLSIFRSAPDTWAIEQLFPLMPIHRLNEEPTQLGHFADLTCDSDGKLDRFIGNGQTKTLLELHNL-----RQNEAYMIGMF 550          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PROM3 (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9303) GN=speA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 3
Query:  132 TYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMF 377
            TY+ NLSIF S PD WAI QLFP++PIH L E P   G  +DLTCDSDGK+D+FIG G   T L LH +      +   Y +GMF
Sbjct:  471 TYYANLSIFRSAPDTWAIEQLFPLMPIHRLKEEPTQLGHFADLTCDSDGKLDRFIGNGQTKTLLELHNL-----RQNEAYMIGMF 550          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_GEOSM (Biosynthetic arginine decarboxylase OS=Geobacter sp. (strain M21) GN=speA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 3
Query:    9 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGA----SDPV------------RTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIG--GGT-SLPLHEMVGGGCGERGPYYLGMF 377
            QL Q  +  F  G L + + A  + +C  + ++I +      P+            +TY  N S+F SIPD WAI QLFPIVPI  LDE+P V   ++D+TCDSDG+I  F+G  G T +LPLH++          YY+G F
Sbjct:  401 QLIQESVSLFNLGYLNMAERANAEWICSKIIRKINSIVEKMKPIPDELQNFQLSLRQTYFANFSLFQSIPDSWAIDQLFPIVPIQRLDEKPDVLTSIADITCDSDGEITSFVGENGRTKALPLHKI-----KVDEQYYIGFF 537          
The following BLAST results are available for this feature:
BLAST of CX300194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SPEA_GLOVI1.059e-2042.36Biosynthetic arginine decarboxylase OS=Gloeobacter... [more]
SPEA2_SYNY31.383e-2048.51Biosynthetic arginine decarboxylase 2 OS=Synechocy... [more]
SPEA_THEEB2.358e-2059.26Biosynthetic arginine decarboxylase OS=Thermosynec... [more]
SPEA1_SYNY31.529e-1939.46Biosynthetic arginine decarboxylase 1 OS=Synechocy... [more]
SPEA_SYNR32.607e-1945.24Biosynthetic arginine decarboxylase OS=Synechococc... [more]
SPEA_SYNPX9.908e-1938.03Biosynthetic arginine decarboxylase OS=Synechococc... [more]
SPEA_PROMA2.883e-1838.13Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_PROMM3.765e-1854.12Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_PROM36.422e-1854.12Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_GEOSM6.422e-1838.73Biosynthetic arginine decarboxylase OS=Geobacter s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07007C10SK SaltLeaf1 Citrus clementina cDNA clone C07007C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300194 ID=CX300194; Name=CX300194; organism=Citrus clementina; type=EST; length=377bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAG
CGCGGGCCTTATTATTTGGGGATGTTC
back to top