CX300194

Overview
NameCX300194
Unique NameCX300194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:432..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_GEOBB (Biosynthetic arginine decarboxylase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=speA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 3
Query:    9 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGA----SDPV------------RTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIG--GGT-SLPLHEMVGGGCGERGPYYLGMF 377
            QL Q  +  F  G L + + A  + +C  + ++I +      P+            +TY  N S+F SIPD WAI QLFPIVPI  LDE+P V   ++D+TCDSDG+I  F+G  G T +LPLH++          YY+G F
Sbjct:  401 QLIQESVSLFNLGYLNMAERANAEWICSKIIRKINSIVEKMKPIPDELQNFQLSLRQTYFANFSLFQSIPDSWAIDQLFPIVPIQRLDEKPDVLTSIADITCDSDGEITSFVGENGRTKALPLHKI-----KVDEQYYIGFF 537          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PROM0 (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9301) GN=speA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17
Identity = 54/127 (42.52%), Postives = 70/127 (55.12%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGAS---DPVR-------------TYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHE 326
            A + K+ C+  F+ G L + + A  + L    AKEI  +   D +              TY+ NLSIF SIPD WAI Q+FPIVPIH   E P  +G  +DLTCDSDGK++ FI  G   + L LHE
Sbjct:  412 AKKFKEDCLVAFRLGFLSLAERAYAEELAWACAKEISNNLNNDEINHPDLSEITETLASTYYANLSIFKSIPDSWAINQIFPIVPIHRHLEEPFCKGNFADLTCDSDGKLNNFIDDGKIKSLLNLHE 538          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_BACV8 (Biosynthetic arginine decarboxylase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=speA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.869e-17
Identity = 52/144 (36.11%), Postives = 74/144 (51.39%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIG--------ASDPVRT--------YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            A Q+++  ++ F  G + ++  A ++ L   V +EI         A D  R         Y  N S+F S+PD WAI Q+FPI+PI  LDE+P     L D+TCDSDGKI  FI        LP+H + G     +  YY+G+F
Sbjct:  396 AQQIREEALDLFSHGIVDLKTRAQIERLYWSVTREINQIASGLKHAPDEFRKLDKLLADKYFCNFSLFQSLPDSWAIDQIFPIMPIQRLDEKPDRNATLQDITCDSDGKIANFISTRYVSHDLPVHSLKG-----KDAYYIGVF 534          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PROM2 (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9215) GN=speA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.440e-17
Identity = 53/127 (41.73%), Postives = 70/127 (55.12%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGAS---DPVR-------------TYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHE 326
            A + K+ C+  F+ G L + + A  + L    AKEI  +   D +              TY+ NLSIF SIPD WAI Q+FPI+PIH   E P  +G  +DLTCDSDGK++ FI  G   + L LHE
Sbjct:  412 AKKFKEDCLVAFRLGFLSLAERAYAEELTWACAKEIANNLNNDEINHPDLFEITETLASTYYANLSIFKSIPDCWAINQIFPIMPIHRHLEEPFCKGNFADLTCDSDGKLNSFINNGKIKSLLNLHE 538          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PROMS (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain AS9601) GN=speA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17
Identity = 57/144 (39.58%), Postives = 76/144 (52.78%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGAS---DPVR-------------TYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMF 377
            A + K+ C+  F+ G L + + A  + L    AKEI  +   D +              TY+ NLSIF SIPD WAI Q+FPIVPIH   E P  +G  +DLTCDSDGK++ FI  G   + L LH+       E   Y +G+F
Sbjct:  412 AKKFKEDCLVAFRLGFLSLAERAYAEELTWACAKEISNNLNNDEINHPDLSEITETLASTYYANLSIFKSIPDSWAINQIFPIVPIHRHLEEPFCKGNFADLTCDSDGKLNNFIDNGKIKSLLNLHKP-----EEDKDYLIGIF 550          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PROM9 (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9312) GN=speA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17
Identity = 57/144 (39.58%), Postives = 76/144 (52.78%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGAS---DPVR-------------TYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMF 377
            A + K+ C+  F+ G L + + A  + L    AKEI  +   D +              TY+ NLSIF SIPD WAI Q+FPIVPIH   E P  +G  +DLTCDSDGK++ FI  G   + L LH+       E   Y +G+F
Sbjct:  412 AKKFKEDCLVAFRLGFLSLAERAYAEELTWACAKEISKNLNNDAINHPDLSEITETLASTYYANLSIFKSIPDSWAINQIFPIVPIHRHLEEPFCKGNFADLTCDSDGKLNNFIDDGKIKSLLNLHKP-----EEDKDYLIGIF 550          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPE1_AVESA (Arginine decarboxylase OS=Avena sativa GN=SPE1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.163e-17
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  126 VRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEM 329
            +  YH+NLS+F+ +PDYW I  LFP++P+  LDE+P  +  L D+TCDSDGK+DKFI    ++PLH +
Sbjct:  429 IYNYHMNLSVFSLMPDYWGIQHLFPMMPVSRLDEKPTHKATLVDVTCDSDGKVDKFIRDTETMPLHPL 496          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_RHOBA (Biosynthetic arginine decarboxylase OS=Rhodopirellula baltica GN=speA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.101e-17
Identity = 53/137 (38.69%), Postives = 69/137 (50.36%), Query Frame = 3
Query:   24 CIEQFKDGTLGIEQLATVDGLCDFVA---KEIGASDPVRT-------------YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMF 377
            C+  F  G L +EQ    + L   +    +E+  S   R              Y  N S+F S+PD WAI QLFPI+PIH L E+P    VL D+TCDSDGK+D F+ GG    +L LH +  G      PY L +F
Sbjct:  437 CMNLFSGGYLPLEQRVAAENLYFAICHRVRELAESMKERPDDLKHLDRMLSDIYFANFSLFQSMPDSWAIDQLFPIMPIHRLLEKPSRHAVLGDITCDSDGKVDAFVCGGGRQRTLMLHPLKSG-----EPYQLAVF 568          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PROMP (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=speA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.274e-17
Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIG----------------ASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG 305
            A + K+ C+  F+ G + +E+ A  + L    AKEI                       TY+ NLS+F SIPD WAI Q+FPI+PIH   E P  +G  +DLTCDSDGK++ FI  G
Sbjct:  412 AKKFKEDCLVAFRLGFICLEERAYAEELTWACAKEIANQLENNEIIHPDLSEITDTLASTYYANLSVFKSIPDTWAINQVFPIIPIHRHLEEPFCKGHFADLTCDSDGKLNNFIDNG 528          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_BACFR (Biosynthetic arginine decarboxylase OS=Bacteroides fragilis GN=speA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.274e-17
Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIG--------ASDPVR--------TYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMF 377
            A Q+++  ++ F  G + ++  A ++ L   + +EI         A D  R         Y  N S+F S+PD WAI Q+FPI+PI  LDE+P     L D+TCDSDGKI  FI   T    H M      ++ PYY+ +F
Sbjct:  396 AQQIREEALDLFSHGIVDLKTRAQIERLYWSITREINQIAGGLKHAPDEFRGLSKLLADKYFCNFSLFQSLPDSWAIDQIFPIMPIQRLDEKPDRSATLQDITCDSDGKIANFI--STRNVAHYMPVHSLKQKEPYYVAVF 534          
The following BLAST results are available for this feature:
BLAST of CX300194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SPEA_GEOBB6.422e-1838.73Biosynthetic arginine decarboxylase OS=Geobacter b... [more]
SPEA_PROM01.431e-1742.52Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_BACV81.869e-1736.11Biosynthetic arginine decarboxylase OS=Bacteroides... [more]
SPEA_PROM22.440e-1741.73Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_PROMS3.187e-1739.58Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_PROM93.187e-1739.58Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPE1_AVESA4.163e-1751.47Arginine decarboxylase OS=Avena sativa GN=SPE1 PE=... [more]
SPEA_RHOBA7.101e-1738.69Biosynthetic arginine decarboxylase OS=Rhodopirell... [more]
SPEA_PROMP9.274e-1740.17Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_BACFR9.274e-1735.46Biosynthetic arginine decarboxylase OS=Bacteroides... [more]

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Properties
Property NameValue
Genbank descriptionC07007C10SK SaltLeaf1 Citrus clementina cDNA clone C07007C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300194 ID=CX300194; Name=CX300194; organism=Citrus clementina; type=EST; length=377bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAG
CGCGGGCCTTATTATTTGGGGATGTTC
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