CX300194

Overview
NameCX300194
Unique NameCX300194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:432..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PSEAE (Biosynthetic arginine decarboxylase OS=Pseudomonas aeruginosa GN=speA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.011e-16
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            Y  N S+F S+PD WAIGQ+ PI+P+H L E P  R VL DLTCDSDGKI +++      TSLP+HE+  G       Y +G+F
Sbjct:  465 YICNFSVFQSLPDTWAIGQVLPILPLHRLGEEPDRRAVLQDLTCDSDGKITQYVDEQSIETSLPVHEVKEG-----EDYLIGVF 543          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_XYLFM (Biosynthetic arginine decarboxylase OS=Xylella fastidiosa (strain M12) GN=speA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.025e-15
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  126 VRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            V  Y VN S+F SIPD WAI Q+FPIVPI  L+E P  RGV+ DLTCDSDG + +++      ++LPLH +  G     G + +G +
Sbjct:  450 VDKYFVNFSVFESIPDVWAINQIFPIVPIERLNEAPTRRGVVCDLTCDSDGTVKQYVENESLDSALPLHVLRHGEAYRIGFFLVGAY 536          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_XYLFA (Biosynthetic arginine decarboxylase OS=Xylella fastidiosa GN=speA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.025e-15
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  126 VRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            V  Y VN S+F SIPD WAI Q+FPIVPI  L+E P  RGV+ DLTCDSDG + +++      ++LPLH +  G     G + +G +
Sbjct:  450 VDKYFVNFSVFESIPDVWAINQIFPIVPIERLNEAPTRRGVVCDLTCDSDGTVKQYVENESLDSALPLHVLRHGEAYRIGFFLVGAY 536          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_GEOUR (Biosynthetic arginine decarboxylase OS=Geobacter uraniireducens (strain Rf4) GN=speA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.025e-15
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  129 RTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIG--GGTS-LPLHEMVGGGCGERGPYYLGMF 377
            +TY  N S+F S+PD WAI QLFPIVPI  L+++P V   ++D+TCDSDG+I  F+G  G T  LPLH++      +   YY+G F
Sbjct:  457 QTYFANFSLFQSVPDSWAIDQLFPIVPIQRLNQKPDVIASIADITCDSDGEITSFVGENGRTKFLPLHKI-----RKDEAYYIGFF 537          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_GEOLS (Biosynthetic arginine decarboxylase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=speA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.339e-15
Identity = 51/142 (35.92%), Postives = 74/142 (52.11%), Query Frame = 3
Query:    9 QLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGAS----DPV------------RTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIG-GGTS--LPLHEMVGGGCGERGPYYLGMF 377
            QL    +  F  G L ++  A  + L   + K+I +      P+            +TY  N S+F SIPD WAI QLFPI+P+  L +RP V   ++D+TCDSDG+I  F+G  G S  LP+H++      +   YY+G F
Sbjct:  401 QLINEAVSLFNLGYLTLQDRAIAEWLYSKIIKKINSIVEKIKPIPEELQNFQLALRQTYFANFSLFQSIPDSWAIDQLFPIMPLQRLGQRPDVMASIADITCDSDGEITSFVGENGRSKFLPMHKL-----KKDEDYYIGFF 537          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_XYLFT (Biosynthetic arginine decarboxylase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=speA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  126 VRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            V  Y VN S+F SIPD WAI Q+FPIVPI  L+E P  RGV+ DLTCDSDG + +++      ++LPLH +  G     G + +G +
Sbjct:  450 VDKYFVNFSVFESIPDVWAINQIFPIVPIERLNEVPTRRGVVCDLTCDSDGTVKQYVENESLDSALPLHVLRHGEAYRIGFFLVGAY 536          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_XYLF2 (Biosynthetic arginine decarboxylase OS=Xylella fastidiosa (strain M23) GN=speA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  126 VRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            V  Y VN S+F SIPD WAI Q+FPIVPI  L+E P  RGV+ DLTCDSDG + +++      ++LPLH +  G     G + +G +
Sbjct:  450 VDKYFVNFSVFESIPDVWAINQIFPIVPIERLNEVPTRRGVVCDLTCDSDGTVKQYVENESLDSALPLHVLRHGEAYRIGFFLVGAY 536          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_XANCP (Biosynthetic arginine decarboxylase OS=Xanthomonas campestris pv. campestris GN=speA PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  126 VRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            V  Y VN S+F SIPD WAI Q+FPIVPI  L+E P  RG+++D+TCDSDG +  ++      +SLPLH +  G     G + +G +
Sbjct:  450 VDKYFVNFSVFESIPDVWAIDQVFPIVPIERLNEAPQRRGIIADMTCDSDGMVKTYVENESLDSSLPLHGLNPGESYRIGFFLVGAY 536          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_GEOMG (Biosynthetic arginine decarboxylase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=speA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  129 RTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIG--GGTS-LPLHEMVGGGCGERGPYYLGMF 377
            +TY  N S+F SIPD WAI QLFPIVPI  L+++P V   ++D+TCDSDG+I  F+G  G T  LPLH++      +   Y++G F
Sbjct:  457 QTYFANFSLFQSIPDSWAIDQLFPIVPIQRLNQKPDVMASIADITCDSDGEITSFVGENGRTKYLPLHKI-----RKDEDYFVGFF 537          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_TOLAT (Biosynthetic arginine decarboxylase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=speA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.597e-14
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  141 VNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            VN S+F S+PD W I Q+FPI+P+  LD++P  RGV+ D+TCDSDG I +++ G     SLP+ EM        G + +G +
Sbjct:  464 VNFSLFQSLPDAWGIDQIFPIMPLSGLDQQPTRRGVIMDITCDSDGMIKEYVDGVGIENSLPMPEMRNDETNYMGFFLVGAY 545          
The following BLAST results are available for this feature:
BLAST of CX300194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SPEA_PSEAE6.011e-1650.00Biosynthetic arginine decarboxylase OS=Pseudomonas... [more]
SPEA_XYLFM1.025e-1547.13Biosynthetic arginine decarboxylase OS=Xylella fas... [more]
SPEA_XYLFA1.025e-1547.13Biosynthetic arginine decarboxylase OS=Xylella fas... [more]
SPEA_GEOUR1.025e-1548.84Biosynthetic arginine decarboxylase OS=Geobacter u... [more]
SPEA_GEOLS1.339e-1535.92Biosynthetic arginine decarboxylase OS=Geobacter l... [more]
SPEA_XYLFT1.749e-1547.13Biosynthetic arginine decarboxylase OS=Xylella fas... [more]
SPEA_XYLF21.749e-1547.13Biosynthetic arginine decarboxylase OS=Xylella fas... [more]
SPEA_XANCP1.749e-1545.98Biosynthetic arginine decarboxylase OS=Xanthomonas... [more]
SPEA_GEOMG1.749e-1548.84Biosynthetic arginine decarboxylase OS=Geobacter m... [more]
SPEA_TOLAT9.597e-1443.90Biosynthetic arginine decarboxylase OS=Tolumonas a... [more]

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Properties
Property NameValue
Genbank descriptionC07007C10SK SaltLeaf1 Citrus clementina cDNA clone C07007C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300194 ID=CX300194; Name=CX300194; organism=Citrus clementina; type=EST; length=377bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAG
CGCGGGCCTTATTATTTGGGGATGTTC
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