CX300194

Overview
NameCX300194
Unique NameCX300194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:432..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_ECO5E (Biosynthetic arginine decarboxylase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 525          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_ECO57 (Biosynthetic arginine decarboxylase OS=Escherichia coli O157:H7 GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPE 551          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_ALHEH (Biosynthetic arginine decarboxylase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=speA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  144 NLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFI---GGGTSLPLHEMVGGGCGERGPYYLGMF 377
            N S+F S+PD WAI Q+FP++P+  LDE P  R VL DLTCDSDG I  ++   G  ++LPL     G      PY LG+F
Sbjct:  459 NFSLFQSMPDVWAIDQIFPVLPLQRLDEPPASRAVLQDLTCDSDGCIRGYVDRDGVESTLPLPPWRPG-----EPYLLGIF 534          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEPW (Biosynthetic arginine decarboxylase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=speA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+         +  PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPVPAWT-----QESPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHESH (Biosynthetic arginine decarboxylase OS=Shewanella sediminis (strain HAW-EB3) GN=speA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.124e-13
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FPI+P+  LD+ P  R V+ D+TCDSDG ID+++ G    T++P+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPIMPLSGLDKAPERRAVMLDITCDSDGTIDQYVDGQGIETTIPVPTW-----SAESPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_YERPE (Biosynthetic arginine decarboxylase OS=Yersinia pestis GN=speA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.061e-12
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+
Sbjct:  487 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDKPPERRAVLLDITCDSDGTIDHYIDGDGVATTMPM 550          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHESW (Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain W3-18-1) GN=speA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSAESPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHESR (Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain MR-7) GN=speA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSAESPYLMGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHESM (Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain MR-4) GN=speA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSAESPYLMGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHESA (Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain ANA-3) GN=speA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSAESPYLMGFF 542          
The following BLAST results are available for this feature:
BLAST of CX300194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SPEA_ECO5E4.763e-1351.52Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_ECO574.763e-1351.52Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_ALHEH4.763e-1348.15Biosynthetic arginine decarboxylase OS=Alkalilimni... [more]
SPEA_SHEPW6.221e-1340.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHESH8.124e-1341.67Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_YERPE1.061e-1251.56Biosynthetic arginine decarboxylase OS=Yersinia pe... [more]
SPEA_SHESW1.386e-1240.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHESR1.386e-1240.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHESM1.386e-1240.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHESA1.386e-1240.48Biosynthetic arginine decarboxylase OS=Shewanella ... [more]

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Properties
Property NameValue
Genbank descriptionC07007C10SK SaltLeaf1 Citrus clementina cDNA clone C07007C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300194 ID=CX300194; Name=CX300194; organism=Citrus clementina; type=EST; length=377bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAG
CGCGGGCCTTATTATTTGGGGATGTTC
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