CX300194
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PASMU (Biosynthetic arginine decarboxylase OS=Pasteurella multocida GN=speA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.087e-12 Identity = 47/135 (34.81%), Postives = 68/135 (50.37%), Query Frame = 3 Query: 33 QFKDGTLGIEQLATVDGLCDFVAKEIGA--SDPVRTY---------------HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMF 377 Q+ G L +EQ A + L + E+G ++ R++ +VN S+F S+PD W I QLFP+ PI +L++ R VL D+TCDSDG ID +I G T++P+ E P LG F Sbjct: 420 QYNVGLLNLEQRAWAEQLYLNICHEVGQLFNEKHRSHRTIIDELQERFADKLYVNFSLFQSLPDAWGIDQLFPVCPISNLNQPVSRRAVLLDITCDSDGTIDHYIDGDGITTTMPMPHY-----EEDNPPLLGFF 549
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEDO (Biosynthetic arginine decarboxylase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=speA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12 Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 3 Query: 141 VNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ PY +G F Sbjct: 466 VNFSLFQSLPDAWGIDQVFPVLPLTCLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWDPANPYLIGFF 542
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PROMH (Biosynthetic arginine decarboxylase OS=Proteus mirabilis (strain HI4320) GN=speA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12 Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPL 320 ++VN S+F S+PD W I QLFP++PI LD+ R VL D+TCDSDG ID ++ G T++P+ Sbjct: 461 FYVNFSLFQSLPDAWGIDQLFPVLPIEGLDKPLDRRAVLLDITCDSDGIIDHYVDGDGVETTMPM 525
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PHOLL (Biosynthetic arginine decarboxylase OS=Photorhabdus luminescens subsp. laumondii GN=speA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11 Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG 302 ++VN S+F S+PD W I QLFP++PI LD+ R VL D+TCDSDG +D ++ G Sbjct: 461 FYVNFSLFQSLPDAWGIDQLFPVLPIEGLDKPLDRRAVLLDITCDSDGIVDHYVDG 516
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_NEIMB (Biosynthetic arginine decarboxylase OS=Neisseria meningitidis serogroup B GN=speA PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11 Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 3 Query: 138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG 302 +VN S+F S+PD W I QLFP+ PI L+E R VL D+TCDSDG ID +I G Sbjct: 458 YVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDHYIDG 512
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_NEIMA (Biosynthetic arginine decarboxylase OS=Neisseria meningitidis serogroup A GN=speA PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11 Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 3 Query: 138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG 302 +VN S+F S+PD W I QLFP+ PI L+E R VL D+TCDSDG ID +I G Sbjct: 458 YVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDHYIDG 512
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_AERS4 (Biosynthetic arginine decarboxylase OS=Aeromonas salmonicida (strain A449) GN=speA PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11 Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 3 Query: 144 NLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG 302 N S+F S+PD W IGQ+FP++P+ LD RG+L D+TCDSDG+++ ++ G Sbjct: 463 NFSLFQSLPDAWGIGQVFPVMPLTGLDRPLSRRGILMDITCDSDGQVEHYVDG 515
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_VIBVY (Biosynthetic arginine decarboxylase OS=Vibrio vulnificus (strain YJ016) GN=speA PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11 Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ L R V+ D+TCDSDG ID ++ G ++LP+ E PY +G F Sbjct: 468 FFVNFSLFQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPV-----PAWNEDEPYLMGFF 546
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_VIBVU (Biosynthetic arginine decarboxylase OS=Vibrio vulnificus GN=speA PE=3 SV=2) HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11 Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377 + VN S+F S+PD W I Q+FP++P+ L R V+ D+TCDSDG ID ++ G ++LP+ E PY +G F Sbjct: 469 FFVNFSLFQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPV-----PAWNEDEPYLMGFF 547 The following BLAST results are available for this feature:
BLAST of CX300194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 99
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300194 ID=CX300194; Name=CX300194; organism=Citrus clementina; type=EST; length=377bpback to top |