CX300194

Overview
NameCX300194
Unique NameCX300194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:432..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PASMU (Biosynthetic arginine decarboxylase OS=Pasteurella multocida GN=speA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.087e-12
Identity = 47/135 (34.81%), Postives = 68/135 (50.37%), Query Frame = 3
Query:   33 QFKDGTLGIEQLATVDGLCDFVAKEIGA--SDPVRTY---------------HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMF 377
            Q+  G L +EQ A  + L   +  E+G   ++  R++               +VN S+F S+PD W I QLFP+ PI +L++    R VL D+TCDSDG ID +I G    T++P+         E  P  LG F
Sbjct:  420 QYNVGLLNLEQRAWAEQLYLNICHEVGQLFNEKHRSHRTIIDELQERFADKLYVNFSLFQSLPDAWGIDQLFPVCPISNLNQPVSRRAVLLDITCDSDGTIDHYIDGDGITTTMPMPHY-----EEDNPPLLGFF 549          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_SHEDO (Biosynthetic arginine decarboxylase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=speA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  141 VNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F
Sbjct:  466 VNFSLFQSLPDAWGIDQVFPVLPLTCLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWDPANPYLIGFF 542          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PROMH (Biosynthetic arginine decarboxylase OS=Proteus mirabilis (strain HI4320) GN=speA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPL 320
            ++VN S+F S+PD W I QLFP++PI  LD+    R VL D+TCDSDG ID ++ G    T++P+
Sbjct:  461 FYVNFSLFQSLPDAWGIDQLFPVLPIEGLDKPLDRRAVLLDITCDSDGIIDHYVDGDGVETTMPM 525          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_PHOLL (Biosynthetic arginine decarboxylase OS=Photorhabdus luminescens subsp. laumondii GN=speA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG 302
            ++VN S+F S+PD W I QLFP++PI  LD+    R VL D+TCDSDG +D ++ G
Sbjct:  461 FYVNFSLFQSLPDAWGIDQLFPVLPIEGLDKPLDRRAVLLDITCDSDGIVDHYVDG 516          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_NEIMB (Biosynthetic arginine decarboxylase OS=Neisseria meningitidis serogroup B GN=speA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG 302
            +VN S+F S+PD W I QLFP+ PI  L+E    R VL D+TCDSDG ID +I G
Sbjct:  458 YVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDHYIDG 512          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_NEIMA (Biosynthetic arginine decarboxylase OS=Neisseria meningitidis serogroup A GN=speA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 3
Query:  138 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG 302
            +VN S+F S+PD W I QLFP+ PI  L+E    R VL D+TCDSDG ID +I G
Sbjct:  458 YVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDHYIDG 512          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_AERS4 (Biosynthetic arginine decarboxylase OS=Aeromonas salmonicida (strain A449) GN=speA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 3
Query:  144 NLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG 302
            N S+F S+PD W IGQ+FP++P+  LD     RG+L D+TCDSDG+++ ++ G
Sbjct:  463 NFSLFQSLPDAWGIGQVFPVMPLTGLDRPLSRRGILMDITCDSDGQVEHYVDG 515          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_VIBVY (Biosynthetic arginine decarboxylase OS=Vibrio vulnificus (strain YJ016) GN=speA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  L      R V+ D+TCDSDG ID ++ G    ++LP+         E  PY +G F
Sbjct:  468 FFVNFSLFQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPV-----PAWNEDEPYLMGFF 546          
BLAST of CX300194 vs. ExPASy Swiss-Prot
Match: SPEA_VIBVU (Biosynthetic arginine decarboxylase OS=Vibrio vulnificus GN=speA PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMF 377
            + VN S+F S+PD W I Q+FP++P+  L      R V+ D+TCDSDG ID ++ G    ++LP+         E  PY +G F
Sbjct:  469 FFVNFSLFQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPV-----PAWNEDEPYLMGFF 547          
The following BLAST results are available for this feature:
BLAST of CX300194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SPEA_PASMU3.087e-1234.81Biosynthetic arginine decarboxylase OS=Pasteurella... [more]
SPEA_SHEDO6.878e-1241.46Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_PROMH6.878e-1249.23Biosynthetic arginine decarboxylase OS=Proteus mir... [more]
SPEA_PHOLL1.532e-1151.79Biosynthetic arginine decarboxylase OS=Photorhabdu... [more]
SPEA_NEIMB3.413e-1156.36Biosynthetic arginine decarboxylase OS=Neisseria m... [more]
SPEA_NEIMA3.413e-1156.36Biosynthetic arginine decarboxylase OS=Neisseria m... [more]
SPEA_AERS43.413e-1149.06Biosynthetic arginine decarboxylase OS=Aeromonas s... [more]
SPEA_VIBVY7.604e-1139.29Biosynthetic arginine decarboxylase OS=Vibrio vuln... [more]
SPEA_VIBVU7.604e-1139.29Biosynthetic arginine decarboxylase OS=Vibrio vuln... [more]

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Properties
Property NameValue
Genbank descriptionC07007C10SK SaltLeaf1 Citrus clementina cDNA clone C07007C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300194 ID=CX300194; Name=CX300194; organism=Citrus clementina; type=EST; length=377bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAG
CGCGGGCCTTATTATTTGGGGATGTTC
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