CX300195

Overview
NameCX300195
Unique NameCX300195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12170 contig Ccv1_Contig12170:1199..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.576e-26
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLV
Sbjct:  363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESDMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.576e-26
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLV
Sbjct:  363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESDMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.576e-26
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAGTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.511e-26
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  363 MASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 9.511e-26
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  365 MASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLV 421
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.242e-25
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 3 
Query:    6 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            +STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  366 SSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 421
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.242e-25
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND V
Sbjct:  366 MASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDPV 422
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.242e-25
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND V
Sbjct:  366 MASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDPV 422
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.622e-25
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA+TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.622e-25
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TFIGNSTSIQEMFRRVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAVTFIGNSTSIQEMFRRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
The following BLAST results are available for this feature:
BLAST of CX300195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
TBB9_GOSHI5.576e-2698.25Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB5_GOSHI5.576e-2698.25Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB4_WHEAT5.576e-2696.49Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4... [more]
TBB8_ORYSJ9.511e-2696.49Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB4_MAIZE9.511e-2696.49Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=... [more]
TBB6_GOSHI1.242e-2598.21Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB2_SOLTU1.242e-2596.49Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU1.242e-2596.49Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB_NAEGR1.622e-2594.74Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1[more]
TBB1_ANEPH1.622e-2596.49Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07007C11SK SaltLeaf1 Citrus clementina cDNA clone C07007C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300195 ID=CX300195; Name=CX300195; organism=Citrus clementina; type=EST; length=445bp
AGATGGCATCTACTTTTATTGGTAACTCAACATCCATCCAAGAGATGTTC
AGGAGGGTGAGTGAACAGTTTACTGCCATGTTCCGGCGTAAGGCCTTTTT
GCATTGGTATACTGGGGAGGGTATGGATGAGATGGAGTTCACTGAGGCAG
AGAGCAACATGAATGACTTGGTGGCTGAGTACCAACAATATCAGGATGCA
ACAGCTGATGATGAGGAAGAGTATGAGGAGGGCCTTGAGGAGAGCTTCGA
GGGCTAAGAAAGGGTAGCAATCAAAGGGCAACCACAGAAAAAGAACGCTT
GATGAGACCAACCCCCTTGTACTGTGGCTTCTTTTGTTGGTGATTACAAT
TTCTGTCTTTTAAGACGATATTGTTCGTTGTTCTTTTCGAGCATTCGAAT
AAAGAATTGCTAGTTTGATCACCTTTAAAAAAAAAAAAAAAAAAC
back to top