CX300195

Overview
NameCX300195
Unique NameCX300195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12170 contig Ccv1_Contig12170:1199..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB4_MACFA (Tubulin beta-4 chain OS=Macaca fascicularis GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.720e-25
Identity = 52/57 (91.23%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB4_HUMAN (Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.720e-25
Identity = 52/57 (91.23%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB4_CHICK (Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.720e-25
Identity = 52/57 (91.23%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB4_BOVIN (Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.720e-25
Identity = 52/57 (91.23%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB3_RAT (Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.720e-25
Identity = 52/57 (91.23%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB3_MOUSE (Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.720e-25
Identity = 52/57 (91.23%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB3_MACFA (Tubulin beta-3 chain OS=Macaca fascicularis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.720e-25
Identity = 52/57 (91.23%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB3_HUMAN (Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.720e-25
Identity = 52/57 (91.23%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB3_BOVIN (Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.720e-25
Identity = 52/57 (91.23%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2_ECHMU (Tubulin beta-2 chain OS=Echinococcus multilocularis GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.720e-25
Identity = 52/57 (91.23%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TF+GNST+IQE+FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFVGNSTAIQELFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
The following BLAST results are available for this feature:
BLAST of CX300195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
TBB4_MACFA4.720e-2591.23Tubulin beta-4 chain OS=Macaca fascicularis GN=TUB... [more]
TBB4_HUMAN4.720e-2591.23Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1... [more]
TBB4_CHICK4.720e-2591.23Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1[more]
TBB4_BOVIN4.720e-2591.23Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 S... [more]
TBB3_RAT4.720e-2591.23Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3... [more]
TBB3_MOUSE4.720e-2591.23Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1... [more]
TBB3_MACFA4.720e-2591.23Tubulin beta-3 chain OS=Macaca fascicularis GN=TUB... [more]
TBB3_HUMAN4.720e-2591.23Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1... [more]
TBB3_BOVIN4.720e-2591.23Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 S... [more]
TBB2_ECHMU4.720e-2591.23Tubulin beta-2 chain OS=Echinococcus multiloculari... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07007C11SK SaltLeaf1 Citrus clementina cDNA clone C07007C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300195 ID=CX300195; Name=CX300195; organism=Citrus clementina; type=EST; length=445bp
AGATGGCATCTACTTTTATTGGTAACTCAACATCCATCCAAGAGATGTTC
AGGAGGGTGAGTGAACAGTTTACTGCCATGTTCCGGCGTAAGGCCTTTTT
GCATTGGTATACTGGGGAGGGTATGGATGAGATGGAGTTCACTGAGGCAG
AGAGCAACATGAATGACTTGGTGGCTGAGTACCAACAATATCAGGATGCA
ACAGCTGATGATGAGGAAGAGTATGAGGAGGGCCTTGAGGAGAGCTTCGA
GGGCTAAGAAAGGGTAGCAATCAAAGGGCAACCACAGAAAAAGAACGCTT
GATGAGACCAACCCCCTTGTACTGTGGCTTCTTTTGTTGGTGATTACAAT
TTCTGTCTTTTAAGACGATATTGTTCGTTGTTCTTTTCGAGCATTCGAAT
AAAGAATTGCTAGTTTGATCACCTTTAAAAAAAAAAAAAAAAAAC
back to top