CX300207

Overview
NameCX300207
Unique NameCX300207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9464 contig Ccv1_Contig9464:570..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_ECO8A (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O8 (strain IAI1) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.010e-14
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQE 250
            ALAC  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A+ LGLV+  VP       A+E+A++
Sbjct:  120 ALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKK 204          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_ECO55 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain 55989 / EAEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.010e-14
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQE 250
            ALAC  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A+ LGLV+  VP       A+E+A++
Sbjct:  120 ALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKK 204          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_ECO24 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.010e-14
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQE 250
            ALAC  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A+ LGLV+  VP       A+E+A++
Sbjct:  120 ALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKK 204          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_SALPK (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A (strain AKU_12601) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIR 280
            ALAC  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I  G+++  + A+  GLV+  VP    Q   LE A E+ +K  +A R
Sbjct:  120 ALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILIGKQLRARQALKAGLVDDVVP----QTILLEAAVELAKKERLAQR 210          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_SALPA (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIR 280
            ALAC  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I  G+++  + A+  GLV+  VP    Q   LE A E+ +K  +A R
Sbjct:  120 ALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILIGKQLRARQALKAGLVDDVVP----QTILLEAAVELAKKERLAQR 210          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_PHOLL (Fatty acid oxidation complex subunit alpha OS=Photorhabdus luminescens subsp. laumondii GN=fadJ PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKG 265
            ALAC  R+C +     LGLPE  L ++PG+GGTQRLPRL+G S A DI+ TG+++  K A+ LGLV+  VP        L+IA E  +KG
Sbjct:  135 ALACHWRVCSQDDKTRLGLPEVQLGLLPGSGGTQRLPRLIGVSSALDIMLTGKQLRAKQALRLGLVDDAVPLD----ILLDIAIEKVKKG 220          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_ECOLC (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALE-IAQEINQKGPIAIR 280
            ALAC  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A+ LGLV+  VP       A+E + Q+     P+ +R
Sbjct:  120 ALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVELVKQDRPSSRPLPVR 215          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_YERPS (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis GN=fadJ PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 2
Query:    2 ALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 208
            ALAC  RIC   +  +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+ +GLV+  VP
Sbjct:  127 ALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVP 197          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_YERPP (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis (strain Pestoides F) GN=fadJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 2
Query:    2 ALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 208
            ALAC  RIC   +  +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+ +GLV+  VP
Sbjct:  154 ALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVP 224          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_YERPN (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadJ PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 2
Query:    2 ALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 208
            ALAC  RIC   +  +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+ +GLV+  VP
Sbjct:  127 ALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVP 197          
The following BLAST results are available for this feature:
BLAST of CX300207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
FADJ_ECO8A3.010e-1447.06Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO553.010e-1447.06Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO243.010e-1447.06Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_SALPK3.932e-1447.37Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPA3.932e-1447.37Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_PHOLL3.932e-1448.89Fatty acid oxidation complex subunit alpha OS=Phot... [more]
FADJ_ECOLC3.932e-1443.75Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_YERPS5.135e-1453.52Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPP5.135e-1453.52Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPN5.135e-1453.52Fatty acid oxidation complex subunit alpha OS=Yers... [more]

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Properties
Property NameValue
Genbank descriptionC07007D11SK SaltLeaf1 Citrus clementina cDNA clone C07007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300207 ID=CX300207; Name=CX300207; organism=Citrus clementina; type=EST; length=448bp
GGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCT
TGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGG
CTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACTGG
CCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTACT
GTGTTCCTGCTGGTCAAGCTCAGCTGAAGGCACTTGAAATTGCTCAGGAA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCAGCATTGGAACTGGAAGAAGAGT
GCTACATTGGGACCTTGCATACAGAGGATCGGTTGGAGGGCTTGGCTGCA
TTTGCCGAGAAGCGGAAACCCAAGTACACCGGCACATAGAGAGAAAGA
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