CX300207

Overview
NameCX300207
Unique NameCX300207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9464 contig Ccv1_Contig9464:570..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_ESCF3 (Fatty acid oxidation complex subunit alpha OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadJ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.494e-13
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQ 259
            ALAC  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++    A+  GLV+  VP       A+E A++  Q
Sbjct:  120 ALACHGRICTDDPKTILGLPEVQLGLLPGSGGTQRLPRLVGLSTALDMILTGKQLRPGQALKSGLVDEIVPQSILLQAAVERAKQERQ 207          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_PHOPR (Fatty acid oxidation complex subunit alpha OS=Photobacterium profundum GN=fadJ PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.951e-13
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKG 265
            ALAC  R+C +     LGLPE  L ++PG+GGTQRLPRL+G + A D+I TG+++  K A +LGLV   VP        L+IA++   KG
Sbjct:  127 ALACHSRVCSDDDKTRLGLPEVQLGLLPGSGGTQRLPRLIGVANALDMILTGKQLRAKKAKNLGLVEEAVPLS----ILLDIAEKQALKG 212          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_ENTS8 (Fatty acid oxidation complex subunit alpha OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadJ PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.951e-13
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQK 262
            ALAC  RIC +    LLGLPE  L ++PG+GGTQRLPRLVG S A ++I  G+++  + A+  GLV+  VP    Q   LE A E+ +K
Sbjct:  120 ALACHSRICTDDVKTLLGLPEVQLGLLPGSGGTQRLPRLVGVSTALEMILAGKQLRPRQALKAGLVDDVVP----QSILLEAAAELAKK 204          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_SHEHH (Fatty acid oxidation complex subunit alpha OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.548e-13
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 2
Query:    2 ALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIA 244
            ALAC  R+C      ++G+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A+ +GLV+  VP       A+E+A
Sbjct:  120 ALACHKRVCSLNPKTMMGVPEVQLGLLPGGGGTQRLPRLVGVTTALDMMLTGKQLRPKQALKMGLVDDAVPESILLRTAVEMA 202          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: CRTL_DICDI (3-hydroxybutyryl-CoA dehydratase-like protein, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0271866 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.328e-13
Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKY 427
            ALA D+R+    A +GL  T L I PG G T  +  +VG+ VA  ++ +   + G +A  LGLV   V + Q    AL +A+ I++   IA+    + +      D+  +L  E +       ++D +EG+ A  E R PK+
Sbjct:  149 ALATDIRVVSNKAPVGLTFTKLGIHPGMGVTHSITNIVGQDVASYMLLSSDIIKGDEAQRLGLVLKSVESDQVLPTALNLAETISKNSTIAVNSTTKTLRNKYNSDLDKSLTREADAQSQCWASKDIVEGILAIRESRDPKH 290          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_SHIDS (Fatty acid oxidation complex subunit alpha OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fadJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.347e-13
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIA-QEINQKGPIAIR 280
            ALAC  R+C +    +L LPE  L ++PG+ GTQRLPRL+G S A ++I TG+++  K A+ LGLV+  VP       A+E+A Q+     P+ +R
Sbjct:  120 ALACHGRVCTDDPKTVLSLPEVQLGLLPGSDGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVELAKQDRPSSRPLPVR 215          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECHP_DANRE (Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.347e-13
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV------NYCVPAGQAQLKAL 235
            AL C  RI    A LGLPE  L I+P AGGTQRLPRL+G   A ++I TGR VS ++A+ LG+V      N C  A +  LKA+
Sbjct:  105 ALVCHYRIAHYKARLGLPEVTLGILPAAGGTQRLPRLIGIPAALELITTGRHVSAQEALKLGMVDQVTEQNTCEVALEFALKAV 188          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: MFPA_BRANA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.677e-13
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQ----AQLKALEIAQ 247
            ++AC  RI    A LGLPE  L +IPG GGTQRLPRLVG + A ++I T + V  ++  SLGL++  VP  +    A+  AL+IA+
Sbjct:  121 SMACHARISAPGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWALDIAE 206          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECH1_PONAB (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Pongo abelii GN=ECH1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.677e-13
Identity = 41/141 (29.08%), Postives = 74/141 (52.48%), Query Frame = 2
Query:    8 ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQL-KALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPK 424
            ACD+R C + A   + E  + +    G  QRLP+++G +S+  ++ FT RK+   +A+  GLV+   P  +  L  AL +A EI+ K P+A++  K  +    +  +A +L       +  L T+D ++ + A  E ++ K
Sbjct:  181 ACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVMLDAALALAAEISSKSPVAVQSTKVNLLYSRDHSVAESLNYVASWNMSMLQTQDLMKSVQAATENKELK 321          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECH1_HUMAN (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Homo sapiens GN=ECH1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 7.415e-13
Identity = 41/141 (29.08%), Postives = 74/141 (52.48%), Query Frame = 2
Query:    8 ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQL-KALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPK 424
            ACD+R C + A   + E  + +    G  QRLP+++G +S+  ++ FT RK+   +A+  GLV+   P  +  L  AL +A EI+ K P+A++  K  +    +  +A +L       +  L T+D ++ + A  E ++ K
Sbjct:  181 ACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVMLDAALALAAEISSKSPVAVQSTKVNLLYSRDHSVAESLNYVASWNMSMLQTQDLVKSVQATTENKELK 321          
The following BLAST results are available for this feature:
BLAST of CX300207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
FADJ_ESCF31.494e-1347.73Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_PHOPR1.951e-1346.67Fatty acid oxidation complex subunit alpha OS=Phot... [more]
FADJ_ENTS81.951e-1348.31Fatty acid oxidation complex subunit alpha OS=Ente... [more]
FADJ_SHEHH2.548e-1344.58Fatty acid oxidation complex subunit alpha OS=Shew... [more]
CRTL_DICDI3.328e-1330.993-hydroxybutyryl-CoA dehydratase-like protein, mit... [more]
FADJ_SHIDS4.347e-1342.71Fatty acid oxidation complex subunit alpha OS=Shig... [more]
ECHP_DANRE4.347e-1350.00Peroxisomal bifunctional enzyme OS=Danio rerio GN=... [more]
MFPA_BRANA5.677e-1346.51Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
ECH1_PONAB5.677e-1329.08Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_HUMAN7.415e-1329.08Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionC07007D11SK SaltLeaf1 Citrus clementina cDNA clone C07007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300207 ID=CX300207; Name=CX300207; organism=Citrus clementina; type=EST; length=448bp
GGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCT
TGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGG
CTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACTGG
CCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTACT
GTGTTCCTGCTGGTCAAGCTCAGCTGAAGGCACTTGAAATTGCTCAGGAA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCAGCATTGGAACTGGAAGAAGAGT
GCTACATTGGGACCTTGCATACAGAGGATCGGTTGGAGGGCTTGGCTGCA
TTTGCCGAGAAGCGGAAACCCAAGTACACCGGCACATAGAGAGAAAGA
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